View conserved binding sites


Gene
PT05G00500
Description
FACT complex subunit SPT16
Alias
Potri.005G005000.1;Potri.005G005000;Potri.005G005000.1;PAC:27030186
Binding siteNameDescriptionLocationPosition
Matrix_26ATMYB3;MYB24Not availableUpstream-570
Matrix_396AP3Not availableUpstream-132
Motif_226E2F1OSPCNAre2f-1 found in the promoter of rice PCNA gene; Located between -142 and -135; te2f-1 found in the promote of Tobacco PCBA gene; Located between -122 and -115; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissueUpstream-1021
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-131
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-570
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-131
Motif_419MYB4 binding site motifNot availableUpstream-570
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Downstream4053
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream4058
Motif_662MYB26PSMyb26 binding site; Myb26 recognizes the c-Myb and P-box-like binding sites representing cis-elements in the promoter regions of several phenylpropanoid biosynthetic genes; Identical to P-box in maize, and to Myb305 binding site in snapdragonUpstream-571
Motif_663E2F binding site motif;E2F/DP BS in AtCDC6Not availableUpstream-1021
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-571
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream4058