| Matrix_101 | ERF5 | Not available | Upstream | -560 |
| Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -514 |
| Matrix_109 | GBF3 | Not available | Upstream | -1466 |
| Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -512 |
| Matrix_129 | ABF1 | Not available | Upstream | -534 |
| Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -393 |
| | | Upstream | -394 |
| Matrix_151 | ASIL1 | Not available | Upstream | -559 |
| Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -561 |
| Matrix_194 | HYH;HY5 | Not available | Upstream | -512 |
| Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -481 |
| Matrix_224 | ERF1 | Not available | Upstream | -1259 |
| Matrix_232 | TCP23 | Not available | Upstream | -485 |
| Matrix_24 | POC1 | Not available | Upstream | -530 |
| Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -561 |
| Matrix_244 | DREB2C | Not available | Upstream | -467 |
| Matrix_247 | PIF3 | Not available | Upstream | -515 |
| Matrix_252 | RAP2.6 | Not available | Upstream | -1258 |
| Matrix_253 | ETT | Not available | Upstream | -389 |
| Matrix_261 | ATERF-1 | Not available | Upstream | -560 |
| Matrix_296 | GBF2 | Not available | Upstream | -1467 |
| Matrix_297 | TCP15 | Not available | Upstream | -485 |
| Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -1467 |
| Matrix_301 | PIL5 | Not available | Upstream | -529 |
| Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -559 |
| Matrix_331 | GBF1 | Not available | Upstream | -1466 |
| Matrix_334 | AT3G23230 | Not available | Upstream | -561 |
| Matrix_338 | AP2 | Not available | Upstream | -512 |
| Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -560 |
| Matrix_345 | POC1 | Not available | Upstream | -512 |
| Matrix_348 | AT5G51910 | Not available | Upstream | -483 |
| | | Upstream | -484 |
| Matrix_355 | ERF10;ERF11 | Not available | Upstream | -559 |
| Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -559 |
| Matrix_394 | DREB_U | Not available | Upstream | -467 |
| Matrix_396 | AP3 | Not available | Intron | 3283 |
| | | Intron | 81 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -391 |
| | | Upstream | -392 |
| Matrix_409 | DEAR3 | Not available | Upstream | -561 |
| | | Upstream | -562 |
| Matrix_42 | AT2G45680 | Not available | Upstream | -483 |
| | | Upstream | -484 |
| Matrix_433 | ATERF1 | Not available | Upstream | -559 |
| Matrix_448 | ATERF6 | Not available | Upstream | -559 |
| Matrix_45 | DRN | Not available | Upstream | -393 |
| | | Upstream | -394 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -391 |
| | | Upstream | -392 |
| Matrix_488 | ABF1 | Not available | Upstream | -514 |
| | | Upstream | -526 |
| Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -560 |
| Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -560 |
| Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -559 |
| Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -561 |
| Matrix_517 | ERF12 | Not available | Upstream | -1260 |
| Matrix_55 | PIF3 | Not available | Upstream | -514 |
| Matrix_8 | KAN1 | Not available | Upstream | -384 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -561 |
| Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -265 |
| Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -329 |
| Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -58 |
| | | Upstream | -329 |
| Motif_244 | ABRE-like binding site motif | Not available | Upstream | -1466 |
| Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -55 |
| | | Upstream | -844 |
| Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -329 |
| Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -393 |
| Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -378 |
| | | Upstream | -396 |
| Motif_525 | CRTDREHVCBF2 | Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperature | Upstream | -391 |
| Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -1466 |
| Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -410 |
| Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -391 |
| Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -1466 |
| Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Upstream | -569 |
Expansion plot
Gene family finder
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Skyline plot
Synteny plot
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Functional clusters
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