PLAZA 3.0 Dicots DNA motifs

View conserved binding sites

Gene: PT03G14060
Description: kinase IV, chloroplastic/mitochondrial
Alias: Potri.003G140600.1;Potri.003G140600;Potri.003G140600.1;PAC:26997264

Binding site	Name	Description	Location	Position
Matrix_463	HAT3.1	Not available	Upstream	-45
Motif_129	GAGAGMGSA1	GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA	Upstream	-68
			Upstream	-66
			Upstream	-64
			Upstream	-62
Motif_258	-10PEHVPSBD	-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light	Upstream	-87
			Intron	1244
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	Intron	1246
Motif_358	UP2ATMSD	Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	Upstream	-142
Motif_441	GAGA8HVBKN3	GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR	Upstream	-68
			Upstream	-66
			Upstream	-64
			Upstream	-62
			Upstream	-60
Motif_450	E2FCONSENSUS	E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants	Intron	1322
Motif_503	EECCRCAH1	EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1	Intron	1225
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	Intron	1321
Motif_69	CTRMCAMV35S	CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA	Upstream	-68
			Upstream	-66
			Upstream	-64
			Upstream	-62
			Upstream	-60
			Upstream	-58
			Upstream	-56
			Upstream	-54
			Upstream	-52