View conserved binding sites


Gene
PT02G02180
Description
Tubulin beta
Alias
Potri.002G021800;Potri.002G021800.1;Potri.002G021800.1;PAC:27020696
Binding siteNameDescriptionLocationPosition
Matrix_165KNAT1Not availableUpstream-1859
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableIntron1136
Matrix_244DREB2CNot availableIntron1135
Matrix_348AT5G51910Not availableUpstream-258
Matrix_385DEAR4Not availableIntron1135
Matrix_39AP1Not availableUpstream-68
Matrix_48PINot availableUpstream-95
Upstream-68
Matrix_92AT1G33760Not availableIntron1135
Motif_1GT1CORECritical for GT-1 binding to box II of rbcS; Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complexUpstream-109
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-121
Motif_261S1FBOXSORPS1L21S1F box conserved both in spinach RPS1 and RPL21 genes encoding the plastid ribosomal protein S1 and L21, respectively; Negative element; Might play a role in downregulating RPS1 and RPL21 promoter activityUpstream-116
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-132
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-118
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-45