View conserved binding sites


Gene
PPE_008G22400
Description
CLIP-associated protein
Alias
ppa000220m.g;ppa000220m;PAC:17667704;ppa000220m
Binding siteNameDescriptionLocationPosition
Matrix_143GATA14;GATA6;GATA5Not availableUpstream-50
Upstream-51
Matrix_203GATA9;GATA12Not availableUpstream-49
Upstream-50
Matrix_25AP3Not availableIntron5294
Matrix_408GATA12Not availableUpstream-49
Upstream-50
Matrix_451STY1Not availableIntron5306
Intron5305
Matrix_48PINot availableUpstream-85
Matrix_505GATA8Not availableUpstream-50
Upstream-51
Motif_165AP3SV40AP-3 binding site consensus sequence in enhancer regions of SV40, MMTV, MLV, IL2Upstream-161
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Intron5270
Motif_305SP1SV40SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-41
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-162
Motif_310ANAERO3CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curatorUpstream-96
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-162
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsIntron5300
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-205
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseUpstream-162
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream9532
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-163
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream9497
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-168
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneIntron5270
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Downstream9397