Matrix_181 | Dof5.7 | Not available | Upstream | -267 |
Matrix_25 | AP3 | Not available | Upstream | -112 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -164 |
| | | Upstream | -165 |
Matrix_48 | PI | Not available | Upstream | -155 |
| | | Upstream | -159 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -127 |
| | | Upstream | -129 |
| | | Upstream | -131 |
| | | Upstream | -133 |
| | | Upstream | -135 |
| | | Upstream | -137 |
| | | Upstream | -139 |
| | | Upstream | -141 |
| | | Upstream | -143 |
| | | Upstream | -145 |
| | | Upstream | -199 |
| | | Upstream | -201 |
| | | Upstream | -203 |
| | | Upstream | -205 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -211 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Intron | 1606 |
Motif_159 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | Upstream | -300 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Intron | 1610 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Intron | 1643 |
| | | Intron | 1195 |
Motif_216 | PYRIMIDINEBOXHVEPB1 | Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction | Intron | 1593 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -289 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Intron | 1604 |
Motif_310 | ANAERO3CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator | Upstream | -189 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Downstream | 3117 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Downstream | 3118 |
Motif_357 | NTBBF1ARROLB | NtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin induction | Upstream | -313 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -92 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -127 |
| | | Upstream | -129 |
| | | Upstream | -131 |
| | | Upstream | -133 |
| | | Upstream | -135 |
| | | Upstream | -137 |
| | | Upstream | -139 |
| | | Upstream | -141 |
| | | Upstream | -143 |
| | | Upstream | -145 |
| | | Upstream | -147 |
| | | Upstream | -199 |
| | | Upstream | -201 |
| | | Upstream | -203 |
| | | Upstream | -205 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -211 |
| | | Upstream | -213 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 3115 |
| | | Intron | 1667 |
| | | Intron | 1603 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -128 |
| | | Upstream | -130 |
| | | Upstream | -132 |
| | | Upstream | -134 |
| | | Upstream | -136 |
| | | Upstream | -138 |
| | | Upstream | -140 |
| | | Upstream | -142 |
| | | Upstream | -144 |
| | | Upstream | -146 |
| | | Upstream | -148 |
| | | Upstream | -150 |
| | | Upstream | -152 |
| | | Upstream | -154 |
| | | Upstream | -198 |
| | | Upstream | -200 |
| | | Upstream | -202 |
| | | Upstream | -204 |
| | | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -210 |
| | | Upstream | -212 |
| | | Upstream | -214 |
| | | Upstream | -216 |
| | | Upstream | -218 |
| | | Upstream | -220 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Intron | 1649 |