View conserved binding sites


Gene
PPE_008G21860
Description
Cyclin-dependent kinase inhibitor 4
Alias
ppa025388m.g;ppa025388m;PAC:17664197;ppa025388m
Binding siteNameDescriptionLocationPosition
Matrix_181Dof5.7Not availableUpstream-267
Matrix_25AP3Not availableUpstream-112
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-164
Upstream-165
Matrix_48PINot availableUpstream-155
Upstream-159
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-127
Upstream-129
Upstream-131
Upstream-133
Upstream-135
Upstream-137
Upstream-139
Upstream-141
Upstream-143
Upstream-145
Upstream-199
Upstream-201
Upstream-203
Upstream-205
Upstream-207
Upstream-209
Upstream-211
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesIntron1606
Motif_159LFYStructural basis for LEAFY floral switch function and similarity with helix-turn-helix proteinsUpstream-300
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFIntron1610
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Intron1643
Intron1195
Motif_216PYRIMIDINEBOXHVEPB1Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA inductionIntron1593
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-289
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsIntron1604
Motif_310ANAERO3CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curatorUpstream-189
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream3117
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream3118
Motif_357NTBBF1ARROLBNtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin inductionUpstream-313
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-92
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-127
Upstream-129
Upstream-131
Upstream-133
Upstream-135
Upstream-137
Upstream-139
Upstream-141
Upstream-143
Upstream-145
Upstream-147
Upstream-199
Upstream-201
Upstream-203
Upstream-205
Upstream-207
Upstream-209
Upstream-211
Upstream-213
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream3115
Intron1667
Intron1603
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-128
Upstream-130
Upstream-132
Upstream-134
Upstream-136
Upstream-138
Upstream-140
Upstream-142
Upstream-144
Upstream-146
Upstream-148
Upstream-150
Upstream-152
Upstream-154
Upstream-198
Upstream-200
Upstream-202
Upstream-204
Upstream-206
Upstream-208
Upstream-210
Upstream-212
Upstream-214
Upstream-216
Upstream-218
Upstream-220
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorIntron1649