View conserved binding sites


Gene
PPE_007G28770
Description
Probable methylenetetrahydrofolate reductase
Alias
ppa003184m.g;ppa003184m;PAC:17662818;ppa003184m
Binding siteNameDescriptionLocationPosition
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-90
Upstream-324
Upstream-982
Upstream-1284
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-86
Upstream-90
Upstream-324
Upstream-982
Upstream-1018
Matrix_184AGL15Not availableUpstream-60
Matrix_196TCP20;AT5G41030Not availableUpstream-1318
Upstream-1386
Upstream-1387
Upstream-1555
Matrix_206CUC1;ANAC100Not availableUpstream-1382
Matrix_211MYB3Not availableUpstream-981
Upstream-1017
Matrix_23ANAC46Not availableUpstream-1383
Matrix_232TCP23Not availableUpstream-1556
Matrix_237MYB55Not availableUpstream-90
Upstream-91
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableUpstream-147
Matrix_257NAC050;ANAC051;anac057;NAC2Not availableUpstream-1382
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-1384
Matrix_297TCP15Not availableUpstream-1556
Matrix_315MYB111Not availableUpstream-324
Upstream-982
Upstream-1018
Upstream-1377
Upstream-1378
Matrix_322NST3;ANAC015;BRN2Not availableUpstream-1383
Matrix_348AT5G51910Not availableUpstream-1557
Matrix_371MYB7;AtMYB6;AtMYB32;ATMYB4Not availableUpstream-983
Upstream-1019
Matrix_385DEAR4Not availableUpstream-146
Matrix_394DREB_UNot availableUpstream-146
Matrix_401MYB55Not availableUpstream-86
Upstream-90
Matrix_41anac058Not availableUpstream-1382
Matrix_42AT2G45680Not availableUpstream-1316
Upstream-1557
Matrix_455MYB111Not availableUpstream-90
Upstream-324
Upstream-982
Upstream-1284
Upstream-1377
Upstream-1378
Matrix_478AT1G01250Not availableUpstream-147
Matrix_496ATMYB15Not availableUpstream-90
Upstream-324
Upstream-982
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-86
Upstream-90
Upstream-324
Upstream-982
Upstream-1034
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-147
Matrix_92AT1G33760Not availableUpstream-146
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-91
Upstream-325
Upstream-983
Upstream-1019
Upstream-1039
Upstream-1285
Upstream-1378
Upstream-1393
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-93
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-91
Upstream-1378
Upstream-1393
Upstream-1402
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-92
Upstream-326
Upstream-984
Upstream-1020
Upstream-1286
Upstream-1378
Upstream-1394
Upstream-1591
Upstream-1605
Motif_419MYB4 binding site motifNot availableUpstream-91
Upstream-1378
Upstream-1393
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-91
Upstream-325
Upstream-1285
Upstream-1378
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-147
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-90
Upstream-324
Upstream-982
Upstream-1018
Upstream-1284
Upstream-1378
Upstream-1401
Motif_54LTREATLTI78Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thalianaUpstream-147
Motif_61PALBOXLPCBox L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activationUpstream-321
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-147
Upstream-1277
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-90
Upstream-324
Upstream-982
Upstream-1378
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-121
Motif_691HBOXCONSENSUSPVCHSH-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigenUpstream-1394