PLAZA 3.0 Dicots DNA motifs

View conserved binding sites

Gene: PPE_007G22210
Description: 40S ribosomal protein S3
Alias: ppa009932m.g;ppa009932m;PAC:17656206;ppa009932m

Binding site	Name	Description	Location	Position
Matrix_184	AGL15	Not available	Intron	1869
Matrix_375	AtSPL8	Not available	Intron	1631
Matrix_407	AP1	Not available	Intron	1869
Matrix_492	ETT	Not available	Intron	1247
			Intron	1648
			Intron	1889
Matrix_74	LFY	Not available	Intron	1200
			Intron	1870
Motif_136	SEF4MOTIFGM7S	SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)	Intron	1202
			Intron	1872
Motif_254	MYB46;MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	Intron	1238
			Intron	1639
			Intron	1880
Motif_279	POLASIG3	Plant polyA signal; Consensus sequence for plant polyadenylation signal	Upstream	-305
			Upstream	-302
			Upstream	-299
			Upstream	-296
			Upstream	-293
			Upstream	-290
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	Intron	1248
			Intron	1649
			Intron	1890
Motif_391	REALPHALGLHCB21	REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation	Intron	1626
Motif_502	MYB98	The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98	Intron	1962
Motif_51	MYB46	Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis	Intron	1237
			Intron	1638
			Intron	1879
Motif_536	TBOXATGAPB	Tbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	Intron	1242
Motif_618	MYB1AT	MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis	Intron	1200
			Intron	1627
Motif_83	CIACADIANLELHC	Region necessary for circadian expression of tomato Lhc gene	Intron	1942