Matrix_48 | PI | Not available | Upstream | -112 |
Matrix_501 | DAG2 | Not available | Upstream | -170 |
Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | Upstream | -127 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -108 |
| | | Upstream | -106 |
| | | Upstream | -104 |
| | | Upstream | -102 |
| | | Upstream | -100 |
| | | Upstream | -98 |
| | | Upstream | -96 |
| | | Upstream | -94 |
| | | Upstream | -92 |
| | | Upstream | -90 |
| | | Upstream | -88 |
| | | Upstream | -86 |
| | | Upstream | -84 |
| | | Upstream | -82 |
| | | Upstream | -80 |
| | | Upstream | -78 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -230 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -189 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -154 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -232 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -116 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -108 |
| | | Upstream | -106 |
| | | Upstream | -104 |
| | | Upstream | -102 |
| | | Upstream | -100 |
| | | Upstream | -98 |
| | | Upstream | -96 |
| | | Upstream | -94 |
| | | Upstream | -92 |
| | | Upstream | -90 |
| | | Upstream | -88 |
| | | Upstream | -86 |
| | | Upstream | -84 |
| | | Upstream | -82 |
| | | Upstream | -80 |
| | | Upstream | -78 |
| | | Upstream | -76 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -276 |
Motif_645 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -637 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -161 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -108 |
| | | Upstream | -106 |
| | | Upstream | -104 |
| | | Upstream | -102 |
| | | Upstream | -100 |
| | | Upstream | -98 |
| | | Upstream | -96 |
| | | Upstream | -94 |
| | | Upstream | -92 |
| | | Upstream | -90 |
| | | Upstream | -88 |
| | | Upstream | -86 |
| | | Upstream | -84 |
| | | Upstream | -82 |
| | | Upstream | -80 |
| | | Upstream | -78 |
| | | Upstream | -76 |
| | | Upstream | -74 |
| | | Upstream | -72 |
| | | Upstream | -70 |
Motif_8 | PALBOXPPC | Box P; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation | Upstream | -124 |