View conserved binding sites


Gene
PPE_007G15020
Description
S-adenosylmethionine synthase
Alias
ppa006915m.g;ppa006915m;PAC:17652374;ppa006915m
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableDownstream1213
Matrix_110ATABI4;AT3G57600Not availableDownstream1212
Matrix_119RRTF1Not availableDownstream1214
Matrix_138RRTF1Not availableDownstream1214
Matrix_146ORA47Not availableDownstream1213
Matrix_147ERF3;AT1G80580Not availableDownstream1213
Matrix_190ATERF1Not availableDownstream1212
Matrix_224ERF1Not availableDownstream1214
Matrix_234RAP2.3Not availableDownstream1213
Matrix_252RAP2.6Not availableDownstream1213
Matrix_261ATERF-1Not availableDownstream1213
Matrix_287ERF2Not availableDownstream1213
Matrix_288RAP2.3Not availableDownstream1214
Matrix_295ERF1Not availableDownstream1213
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableDownstream1214
Matrix_334AT3G23230Not availableDownstream1212
Matrix_343AT2G33710Not availableDownstream1213
Matrix_355ERF10;ERF11Not availableDownstream1214
Matrix_360ORA59Not availableDownstream1213
Matrix_363RAP2.3Not availableDownstream1214
Matrix_378ATERF1Not availableDownstream1213
Matrix_406ATERF-7Not availableDownstream1215
Matrix_426CRF1;CRF2Not availableDownstream1212
Matrix_45DRNNot availableDownstream1213
Matrix_462ATERF-8Not availableDownstream1215
Matrix_473RRTF1Not availableDownstream1213
Matrix_484ATERF13Not availableDownstream1213
Matrix_493AT1G22985;AT1G71130Not availableDownstream1213
Matrix_50ATERF14;AT5G43410Not availableDownstream1214
Matrix_506DRNL;ATERF-4Not availableDownstream1212
Matrix_517ERF12Not availableDownstream1213
Matrix_86CRF5;CRF6;CRF4Not availableDownstream1212
Matrix_91CRF3Not availableDownstream1213
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream1197
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream1238
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream1218
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureDownstream1212
Motif_317GAREATGARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectivelyDownstream1228
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureDownstream1260
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream1240
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneDownstream1207
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaDownstream1258
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Downstream1257
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-698