View conserved binding sites


Gene
PPE_007G09330
Description
Thioredoxin-like 3-1, chloroplastic
Alias
ppa012043m.g;ppa012043m;PAC:17657573;ppa012043m
Binding siteNameDescriptionLocationPosition
Matrix_216TCP16Not availableUpstream-319
Matrix_232TCP23Not availableUpstream-320
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-319
Matrix_294MEE35Not availableUpstream-319
Matrix_297TCP15Not availableUpstream-320
Matrix_348AT5G51910Not availableUpstream-319
Matrix_42AT2G45680Not availableUpstream-319
Matrix_507TCP3Not availableUpstream-320
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterDownstream1349
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesDownstream1353
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-263
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream1351
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRIntron691
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1356
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1356
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron691
Intron693
Intron695
Intron697
Intron699