View conserved binding sites


Gene
PPE_006G31490
Description
Galactinol synthase 2
Alias
ppa026497m.g;ppa026497m;PAC:17644037;ppa026497m
Binding siteNameDescriptionLocationPosition
Matrix_196TCP20;AT5G41030Not availableUpstream-510
Matrix_232TCP23Not availableUpstream-511
Matrix_297TCP15Not availableUpstream-511
Matrix_338AP2Not availableUpstream-561
Matrix_348AT5G51910Not availableUpstream-512
Matrix_42AT2G45680Not availableUpstream-512
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-30
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-204
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Downstream1422
Downstream1421
Downstream1420
Downstream1419
Downstream1418
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1423
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream1423