View conserved binding sites


Gene
PPE_005G24340
Description
Probable ADP-ribosylation factor GTPase-activating protein AGD15
Alias
ppa010611m.g;ppa010611m;PAC:17654335;ppa010611m
Binding siteNameDescriptionLocationPosition
Matrix_48PINot availableUpstream-126
Upstream-127
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-301
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-305
Upstream-310
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAIntron1315
Intron1313
Intron1311
Intron1309
Intron1307
Intron1305
Intron1303
Intron1301
Intron1299
Intron1297
Intron1295
Intron1293
Upstream-104
Upstream-106
Upstream-108
Upstream-110
Upstream-112
Upstream-114
Upstream-116
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-222
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-308
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-223
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRIntron1315
Intron1313
Intron1311
Intron1309
Intron1307
Intron1305
Intron1303
Intron1301
Intron1299
Intron1297
Intron1295
Intron1293
Intron1291
Upstream-104
Upstream-106
Upstream-108
Upstream-110
Upstream-112
Upstream-114
Upstream-116
Upstream-118
Motif_585ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDHPRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in ArabidopsisUpstream-300
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron1316
Intron1314
Intron1312
Intron1310
Intron1308
Intron1306
Intron1304
Intron1302
Intron1300
Intron1298
Intron1296
Intron1294
Intron1292
Intron1290
Intron1288
Intron1286
Intron1284
Upstream-105
Upstream-107
Upstream-109
Upstream-111
Upstream-113
Upstream-115
Upstream-117
Upstream-119
Upstream-121
Upstream-123
Upstream-125
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-33