Matrix_48 | PI | Not available | Upstream | -126 |
| | | Upstream | -127 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -301 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -305 |
| | | Upstream | -310 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Intron | 1315 |
| | | Intron | 1313 |
| | | Intron | 1311 |
| | | Intron | 1309 |
| | | Intron | 1307 |
| | | Intron | 1305 |
| | | Intron | 1303 |
| | | Intron | 1301 |
| | | Intron | 1299 |
| | | Intron | 1297 |
| | | Intron | 1295 |
| | | Intron | 1293 |
| | | Upstream | -104 |
| | | Upstream | -106 |
| | | Upstream | -108 |
| | | Upstream | -110 |
| | | Upstream | -112 |
| | | Upstream | -114 |
| | | Upstream | -116 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -222 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -308 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -223 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Intron | 1315 |
| | | Intron | 1313 |
| | | Intron | 1311 |
| | | Intron | 1309 |
| | | Intron | 1307 |
| | | Intron | 1305 |
| | | Intron | 1303 |
| | | Intron | 1301 |
| | | Intron | 1299 |
| | | Intron | 1297 |
| | | Intron | 1295 |
| | | Intron | 1293 |
| | | Intron | 1291 |
| | | Upstream | -104 |
| | | Upstream | -106 |
| | | Upstream | -108 |
| | | Upstream | -110 |
| | | Upstream | -112 |
| | | Upstream | -114 |
| | | Upstream | -116 |
| | | Upstream | -118 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -300 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Intron | 1316 |
| | | Intron | 1314 |
| | | Intron | 1312 |
| | | Intron | 1310 |
| | | Intron | 1308 |
| | | Intron | 1306 |
| | | Intron | 1304 |
| | | Intron | 1302 |
| | | Intron | 1300 |
| | | Intron | 1298 |
| | | Intron | 1296 |
| | | Intron | 1294 |
| | | Intron | 1292 |
| | | Intron | 1290 |
| | | Intron | 1288 |
| | | Intron | 1286 |
| | | Intron | 1284 |
| | | Upstream | -105 |
| | | Upstream | -107 |
| | | Upstream | -109 |
| | | Upstream | -111 |
| | | Upstream | -113 |
| | | Upstream | -115 |
| | | Upstream | -117 |
| | | Upstream | -119 |
| | | Upstream | -121 |
| | | Upstream | -123 |
| | | Upstream | -125 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -33 |