View conserved binding sites


Gene
PPE_005G00190
Description
No description available
Alias
ppa025548m.g;ppa025548m;PAC:17640349;ppa025548m
Binding siteNameDescriptionLocationPosition
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableUpstream-23
Upstream-1637
Matrix_244DREB2CNot availableUpstream-22
Matrix_348AT5G51910Not availableDownstream2059
Matrix_385DEAR4Not availableUpstream-22
Matrix_394DREB_UNot availableUpstream-22
Upstream-1636
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-22
Matrix_478AT1G01250Not availableUpstream-23
Upstream-1637
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-23
Upstream-1637
Matrix_92AT1G33760Not availableUpstream-22
Upstream-1636
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-22
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-29
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-23
Upstream-1637
Motif_54LTREATLTI78Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thalianaUpstream-22
Upstream-1637
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-23
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-892
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABAUpstream-23
Upstream-1637
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-328
Upstream-330
Upstream-332