PLAZA 3.0 Dicots DNA motifs

View conserved binding sites

Gene: PPE_004G29190
Description: Rho GTPase-activating protein REN1
Alias: ppa001224m.g;ppa001224m;PAC:17644839;ppa001224m

Binding site	Name	Description	Location	Position
Matrix_226	GATA1	Not available	Upstream	-108
Matrix_372	ANAC81	DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus	Downstream	14601
			Downstream	14602
Matrix_393	REM1	Not available	Intron	7600
			Intron	7823
			Intron	11504
Matrix_396	AP3	Not available	Upstream	-212
Matrix_414	AGL15	Not available	Downstream	14611
Matrix_507	TCP3	Not available	Intron	2612
			Intron	7387
			Intron	12352
Motif_129	GAGAGMGSA1	GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA	Intron	9165
			Intron	9167
			Intron	9169
Motif_131	P1BS	PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii	Downstream	14522
Motif_195	TATABOX4	TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	Upstream	-1360
Motif_254	MYB46;MYB83	MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes	Upstream	-491
Motif_358	UP2ATMSD	Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	Upstream	-211
Motif_441	GAGA8HVBKN3	GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR	Intron	9165
			Intron	9167
			Intron	9169
			Intron	9171
Motif_476	XYLAT	cis-element identified among the promoters of the core xylem gene set	Downstream	14516
Motif_49	TATAPVTRNALEU	TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)	Upstream	-1361
Motif_51	MYB46	Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis	Upstream	-491
Motif_549	TBF1	The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition	Downstream	14493
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	Downstream	14601
			Downstream	14602
			Downstream	14603
			Downstream	14604
			Downstream	14605
Motif_658	GT1CONSENSUS	Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression	Downstream	14610
			Downstream	14621
Motif_682	GT1GMSCAM4	GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression	Downstream	14610
			Downstream	14621
Motif_69	CTRMCAMV35S	CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA	Upstream	-177
			Upstream	-175
			Upstream	-173
			Intron	9165
			Intron	9167
			Intron	9169
			Intron	9171
			Intron	9173
			Intron	9175
			Intron	9177