Matrix_101 | ERF5 | Not available | Upstream | -664 |
Matrix_119 | RRTF1 | Not available | Upstream | -663 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -662 |
Matrix_224 | ERF1 | Not available | Upstream | -663 |
Matrix_234 | RAP2.3 | Not available | Upstream | -664 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -663 |
Matrix_252 | RAP2.6 | Not available | Upstream | -664 |
Matrix_261 | ATERF-1 | Not available | Upstream | -663 |
Matrix_272 | DEAR4 | Not available | Upstream | -664 |
Matrix_287 | ERF2 | Not available | Upstream | -664 |
Matrix_288 | RAP2.3 | Not available | Upstream | -663 |
Matrix_29 | AP1 | Not available | Upstream | -1122 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -663 |
Matrix_334 | AT3G23230 | Not available | Upstream | -663 |
Matrix_343 | AT2G33710 | Not available | Upstream | -664 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -663 |
Matrix_360 | ORA59 | Not available | Upstream | -662 |
Matrix_363 | RAP2.3 | Not available | Upstream | -663 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -798 |
| | | Upstream | -796 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -663 |
Matrix_378 | ATERF1 | Not available | Upstream | -664 |
Matrix_401 | MYB55 | Not available | Upstream | -667 |
Matrix_406 | ATERF-7 | Not available | Upstream | -662 |
Matrix_409 | DEAR3 | Not available | Upstream | -663 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -663 |
Matrix_45 | DRN | Not available | Upstream | -662 |
Matrix_462 | ATERF-8 | Not available | Upstream | -662 |
Matrix_473 | RRTF1 | Not available | Upstream | -664 |
Matrix_484 | ATERF13 | Not available | Upstream | -662 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -663 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -663 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -663 |
Matrix_517 | ERF12 | Not available | Upstream | -662 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -663 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -663 |
Matrix_91 | CRF3 | Not available | Upstream | -663 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Intron | 2363 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -1119 |
Motif_15 | AMYBOX2 | amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barley | Downstream | 4720 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -219 |
Motif_168 | IBOX | I box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated gene | Upstream | -316 |
Motif_174 | SREATMSD | sugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in Arabidopsis | Upstream | -1490 |
Motif_181 | IBOXCORENT | I-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regions | Upstream | -317 |
Motif_183 | TRANSINITDICOTS | Context sequence of translational initiation codon in dicots | Upstream | -344 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -1821 |
| | | Downstream | 4708 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -928 |
| | | Upstream | -925 |
Motif_307 | TATCCAYMOTIFOSRAMY3D | TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression | Downstream | 4720 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -221 |
| | | Upstream | -209 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -661 |
Motif_317 | GAREAT | GARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectively | Upstream | -336 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -1121 |
| | | Upstream | -1115 |
| | | Upstream | -924 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -1122 |
| | | Upstream | -1116 |
| | | Upstream | -931 |
Motif_382 | CATATGGMSAUR | Sequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | Upstream | -1821 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -215 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Intron | 2370 |
Motif_419 | MYB4 binding site motif | Not available | Downstream | 4687 |
Motif_489 | SORLREP3AT | one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -1817 |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | Upstream | -344 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -642 |
| | | Intron | 2370 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -1123 |
| | | Upstream | -932 |
| | | Upstream | -801 |
| | | Upstream | -800 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -214 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Downstream | 4721 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -1489 |
| | | Upstream | -790 |
| | | Upstream | -784 |
| | | Upstream | -777 |
| | | Upstream | -323 |
| | | Upstream | -222 |
| | | Upstream | -210 |
Motif_667 | TATABOXOSPAL | Binding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoter | Upstream | -911 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -642 |
| | | Intron | 2370 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -790 |
| | | Upstream | -784 |
| | | Upstream | -777 |
| | | Upstream | -323 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Intron | 2363 |