View conserved binding sites


Gene
PPE_004G11760
Description
CTP synthase
Alias
ppa003314m.g;ppa003314m;PAC:17644779;ppa003314m
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-664
Matrix_119RRTF1Not availableUpstream-663
Matrix_147ERF3;AT1G80580Not availableUpstream-662
Matrix_224ERF1Not availableUpstream-663
Matrix_234RAP2.3Not availableUpstream-664
Matrix_243RAP2.12;RAP2.2Not availableUpstream-663
Matrix_252RAP2.6Not availableUpstream-664
Matrix_261ATERF-1Not availableUpstream-663
Matrix_272DEAR4Not availableUpstream-664
Matrix_287ERF2Not availableUpstream-664
Matrix_288RAP2.3Not availableUpstream-663
Matrix_29AP1Not availableUpstream-1122
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-663
Matrix_334AT3G23230Not availableUpstream-663
Matrix_343AT2G33710Not availableUpstream-664
Matrix_355ERF10;ERF11Not availableUpstream-663
Matrix_360ORA59Not availableUpstream-662
Matrix_363RAP2.3Not availableUpstream-663
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-798
Upstream-796
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-663
Matrix_378ATERF1Not availableUpstream-664
Matrix_401MYB55Not availableUpstream-667
Matrix_406ATERF-7Not availableUpstream-662
Matrix_409DEAR3Not availableUpstream-663
Matrix_426CRF1;CRF2Not availableUpstream-663
Matrix_45DRNNot availableUpstream-662
Matrix_462ATERF-8Not availableUpstream-662
Matrix_473RRTF1Not availableUpstream-664
Matrix_484ATERF13Not availableUpstream-662
Matrix_493AT1G22985;AT1G71130Not availableUpstream-663
Matrix_50ATERF14;AT5G43410Not availableUpstream-663
Matrix_506DRNL;ATERF-4Not availableUpstream-663
Matrix_517ERF12Not availableUpstream-662
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-663
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-663
Matrix_91CRF3Not availableUpstream-663
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxIntron2363
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-1119
Motif_15AMYBOX2amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barleyDownstream4720
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-219
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-316
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-1490
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-317
Motif_183TRANSINITDICOTSContext sequence of translational initiation codon in dicotsUpstream-344
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1821
Downstream4708
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-928
Upstream-925
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionDownstream4720
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-221
Upstream-209
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-661
Motif_317GAREATGARE (GA-responsive element); Occurrence of GARE in GA-inducible, GA-responsible, and GA-nonresponsive genes found in Arabidopsis seed germination was 20, 18, and 12%, respectivelyUpstream-336
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-1121
Upstream-1115
Upstream-924
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-1122
Upstream-1116
Upstream-931
Motif_382CATATGGMSAURSequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsivenessUpstream-1821
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-215
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorIntron2370
Motif_419MYB4 binding site motifNot availableDownstream4687
Motif_489SORLREP3ATone of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-1817
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-344
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-642
Intron2370
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-1123
Upstream-932
Upstream-801
Upstream-800
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-214
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Downstream4721
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1489
Upstream-790
Upstream-784
Upstream-777
Upstream-323
Upstream-222
Upstream-210
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterUpstream-911
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-642
Intron2370
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-790
Upstream-784
Upstream-777
Upstream-323
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataIntron2363