View conserved binding sites


Gene
PPE_004G11250
Description
Cationic amino acid transporter 8, vacuolar
Alias
ppa018037m.g;ppa018037m;PAC:17659463;ppa018037m
Binding siteNameDescriptionLocationPosition
Matrix_124AtHB23;ATHB13;ATHB20;ATHB5Not availableUpstream-131
Matrix_140ATHB5DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitroUpstream-131
Motif_183TRANSINITDICOTSContext sequence of translational initiation codon in dicotsUpstream-354
Motif_277ATHB1 binding site motifRecognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificitiesUpstream-131
Motif_352ATHB5 binding site motifConsensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitroUpstream-131
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-354
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-1179