View conserved binding sites


Gene
PPE_003G05560
Description
Mitochondrial arginine transporter BAC2
Alias
ppa025391m.g;ppa025391m;PAC:17668618;ppa025391m
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-484
Upstream-485
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-484
Upstream-485
Matrix_109GBF3Not availableUpstream-484
Upstream-485
Upstream-486
Upstream-487
Matrix_113ABI5Not availableUpstream-484
Upstream-485
Upstream-486
Upstream-487
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-481
Upstream-482
Upstream-483
Matrix_122ABF1;AREB2Not availableUpstream-484
Upstream-485
Upstream-486
Matrix_129ABF1Not availableUpstream-485
Upstream-486
Matrix_14ZCW32;AT5G62610Not availableUpstream-485
Upstream-486
Upstream-487
Matrix_145GBF4;AT5G44080Not availableUpstream-486
Upstream-487
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-482
Matrix_156POC1Not availableUpstream-484
Upstream-485
Upstream-486
Upstream-487
Matrix_192FHY3/FAR1Not availableUpstream-482
Upstream-483
Upstream-486
Upstream-487
Matrix_194HYH;HY5Not availableUpstream-482
Upstream-483
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-485
Upstream-486
Matrix_214AP1Not availableUpstream-483
Upstream-484
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-482
Upstream-483
Upstream-486
Upstream-487
Matrix_24POC1Not availableUpstream-482
Matrix_247PIF3Not availableUpstream-485
Upstream-486
Matrix_25AP3Not availableUpstream-750
Matrix_264ATAREB1Not availableUpstream-482
Upstream-483
Upstream-485
Upstream-486
Matrix_296GBF2Not availableUpstream-485
Upstream-486
Upstream-487
Matrix_300bZIP68;bZIP16Not availableUpstream-485
Upstream-486
Upstream-487
Matrix_301PIL5Not availableUpstream-487
Matrix_331GBF1Not availableUpstream-484
Upstream-485
Upstream-486
Upstream-487
Matrix_332SPT;ALCNot availableUpstream-485
Upstream-486
Upstream-487
Matrix_338AP2Not availableUpstream-482
Upstream-483
Matrix_339bHLH104Not availableUpstream-485
Matrix_345POC1Not availableUpstream-481
Upstream-482
Upstream-483
Matrix_356PRR5Not availableUpstream-478
Upstream-479
Upstream-483
Matrix_389ILR3Not availableUpstream-485
Upstream-486
Matrix_403BZR1Not availableUpstream-483
Upstream-484
Matrix_443AGL15Not availableUpstream-483
Upstream-484
Matrix_488ABF1Not availableUpstream-477
Upstream-478
Upstream-485
Matrix_55PIF3Not availableUpstream-484
Upstream-485
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-486
Upstream-487
Matrix_64PIF5Not availableUpstream-486
Upstream-487
Matrix_7PIF4Not availableUpstream-485
Upstream-486
Upstream-487
Upstream-488
Matrix_77PRR5Not availableUpstream-483
Upstream-484
Upstream-485
Matrix_80BIM1Not availableUpstream-486
Upstream-487
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFUpstream-459
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-487
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-487
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-485
Upstream-486
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-486
Upstream-487
Motif_244ABRE-like binding site motifNot availableUpstream-485
Upstream-487
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-547
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-485
Upstream-487
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-728
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABAUpstream-485
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-487
Motif_388CPRFPCCHS;AtbZIP1BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA bindingUpstream-486
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-486
Upstream-487
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-486
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-485
Upstream-488
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-459
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-488
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-717
Upstream-757
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-485
Upstream-488
Motif_638ABRE binding site motifNot availableUpstream-485
Upstream-487
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-484
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-756
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-756
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-476