Matrix_101 | ERF5 | Not available | Downstream | 1877 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -1829 |
Matrix_146 | ORA47 | Not available | Downstream | 1877 |
Matrix_151 | ASIL1 | Not available | Downstream | 1666 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Downstream | 1879 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Downstream | 1876 |
Matrix_25 | AP3 | Not available | Upstream | -368 |
| | | Upstream | -635 |
| | | Upstream | -636 |
| | | Upstream | -641 |
Matrix_261 | ATERF-1 | Not available | Downstream | 1877 |
Matrix_345 | POC1 | Not available | Upstream | -1829 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Downstream | 1799 |
Matrix_385 | DEAR4 | Not available | Downstream | 1800 |
Matrix_387 | ORA47 | Not available | Downstream | 1879 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Downstream | 1878 |
Matrix_409 | DEAR3 | Not available | Downstream | 1878 |
Matrix_452 | MYB46 | Not available | Upstream | -49 |
| | | Upstream | -1251 |
Matrix_478 | AT1G01250 | Not available | Downstream | 1799 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -1614 |
Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Downstream | 1799 |
Matrix_91 | CRF3 | Not available | Downstream | 1877 |
Matrix_92 | AT1G33760 | Not available | Downstream | 1800 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -491 |
| | | Upstream | -493 |
| | | Upstream | -495 |
| | | Upstream | -497 |
| | | Upstream | -499 |
| | | Upstream | -501 |
| | | Upstream | -503 |
| | | Upstream | -505 |
| | | Upstream | -507 |
| | | Upstream | -509 |
| | | Upstream | -511 |
| | | Upstream | -513 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Downstream | 1787 |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | Downstream | 1878 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Downstream | 1787 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Downstream | 1787 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Downstream | 2085 |
Motif_382 | CATATGGMSAUR | Sequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness | Upstream | -559 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Downstream | 1877 |
Motif_43 | CCA1 binding site motif | CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | Downstream | 1713 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -491 |
| | | Upstream | -493 |
| | | Upstream | -495 |
| | | Upstream | -497 |
| | | Upstream | -499 |
| | | Upstream | -501 |
| | | Upstream | -503 |
| | | Upstream | -505 |
| | | Upstream | -507 |
| | | Upstream | -509 |
| | | Upstream | -511 |
| | | Upstream | -513 |
| | | Upstream | -515 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Downstream | 1901 |
| | | Downstream | 1798 |
| | | Downstream | 1762 |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | Upstream | -872 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -1530 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -186 |
| | | Upstream | -1203 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Downstream | 1901 |
| | | Downstream | 1798 |
| | | Downstream | 1762 |
Motif_643 | DRE2COREZMRAB17 | DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABA | Downstream | 1901 |
| | | Downstream | 1798 |
| | | Downstream | 1762 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -492 |
| | | Upstream | -494 |
| | | Upstream | -496 |
| | | Upstream | -498 |
| | | Upstream | -500 |
| | | Upstream | -502 |
| | | Upstream | -504 |
| | | Upstream | -506 |
| | | Upstream | -508 |
| | | Upstream | -510 |
| | | Upstream | -512 |
| | | Upstream | -514 |
| | | Upstream | -516 |
| | | Upstream | -518 |
| | | Upstream | -520 |
| | | Upstream | -522 |
| | | Upstream | -698 |
| | | Upstream | -700 |
| | | Upstream | -702 |
| | | Upstream | -704 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -180 |