View conserved binding sites


Gene
PPE_002G12910
Description
Phospholipase A(1) DAD1, chloroplastic
Alias
ppa020861m.g;ppa020861m;PAC:17641518;ppa020861m
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableDownstream1877
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-1829
Matrix_146ORA47Not availableDownstream1877
Matrix_151ASIL1Not availableDownstream1666
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableDownstream1879
Matrix_155RAP2.6;ERF110;ABR1Not availableDownstream1876
Matrix_25AP3Not availableUpstream-368
Upstream-635
Upstream-636
Upstream-641
Matrix_261ATERF-1Not availableDownstream1877
Matrix_345POC1Not availableUpstream-1829
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableDownstream1799
Matrix_385DEAR4Not availableDownstream1800
Matrix_387ORA47Not availableDownstream1879
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableDownstream1878
Matrix_409DEAR3Not availableDownstream1878
Matrix_452MYB46Not availableUpstream-49
Upstream-1251
Matrix_478AT1G01250Not availableDownstream1799
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-1614
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableDownstream1799
Matrix_91CRF3Not availableDownstream1877
Matrix_92AT1G33760Not availableDownstream1800
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-491
Upstream-493
Upstream-495
Upstream-497
Upstream-499
Upstream-501
Upstream-503
Upstream-505
Upstream-507
Upstream-509
Upstream-511
Upstream-513
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Downstream1787
Motif_189CMSRE1IBSPOACMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A geneDownstream1878
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream1787
Motif_336MYBMOUSEBinding site for mouse c-myb proteinDownstream1787
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationDownstream2085
Motif_382CATATGGMSAURSequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsivenessUpstream-559
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LDownstream1877
Motif_43CCA1 binding site motifCCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb geneDownstream1713
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-491
Upstream-493
Upstream-495
Upstream-497
Upstream-499
Upstream-501
Upstream-503
Upstream-505
Upstream-507
Upstream-509
Upstream-511
Upstream-513
Upstream-515
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Downstream1901
Downstream1798
Downstream1762
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Upstream-872
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-1530
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-186
Upstream-1203
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Downstream1901
Downstream1798
Downstream1762
Motif_643DRE2COREZMRAB17DRE2 core found in maize rab17 gene promoter; DBF1 and DBF2 bound to DRE2; rab17 is expressed during late embryogenesis, and is induced by ABADownstream1901
Downstream1798
Downstream1762
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-492
Upstream-494
Upstream-496
Upstream-498
Upstream-500
Upstream-502
Upstream-504
Upstream-506
Upstream-508
Upstream-510
Upstream-512
Upstream-514
Upstream-516
Upstream-518
Upstream-520
Upstream-522
Upstream-698
Upstream-700
Upstream-702
Upstream-704
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-180