Matrix_10 | STY1 | Not available | Upstream | -378 |
| | | Upstream | -381 |
| | | Upstream | -382 |
Matrix_222 | AGL2 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | Upstream | -120 |
Matrix_358 | AGL15 | Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study | Upstream | -121 |
Matrix_386 | AGL1 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | Upstream | -120 |
Matrix_43 | AG | Not available | Upstream | -120 |
Matrix_445 | AG | Not available | Upstream | -120 |
Matrix_98 | AG | Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS | Upstream | -120 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Intron | 448 |
| | | Intron | 446 |
| | | Intron | 444 |
| | | Intron | 442 |
| | | Intron | 440 |
| | | Intron | 438 |
| | | Intron | 436 |
| | | Intron | 434 |
| | | Intron | 432 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -273 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Intron | 448 |
| | | Intron | 446 |
| | | Intron | 444 |
| | | Intron | 442 |
| | | Intron | 440 |
| | | Intron | 438 |
| | | Intron | 436 |
| | | Intron | 434 |
| | | Intron | 432 |
| | | Intron | 430 |
Motif_6 | AGL1 binding site motif | Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures | Upstream | -119 |
Motif_626 | ACGTTBOX | T-box according to the nomenclature of ACGT elements; One of ACGT elements; See also ACGTABOX,ACGTCBOX, and CACGTGMOTIF | Upstream | -627 |
Motif_653 | INTRONLOWER | 3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant introns | Upstream | -555 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Intron | 449 |
| | | Intron | 447 |
| | | Intron | 445 |
| | | Intron | 443 |
| | | Intron | 441 |
| | | Intron | 439 |
| | | Intron | 437 |
| | | Intron | 435 |
| | | Intron | 433 |
| | | Intron | 431 |
| | | Intron | 429 |
| | | Intron | 427 |
| | | Intron | 425 |
| | | Intron | 423 |
| | | Intron | 421 |
| | | Upstream | -4 |