View conserved binding sites


Gene
PPE_001G37950
Description
homeotic protein PMADS 1
Alias
ppa026083m.g;ppa026083m;PAC:17651348;ppa026083m
Binding siteNameDescriptionLocationPosition
Matrix_10STY1Not availableUpstream-378
Upstream-381
Upstream-382
Matrix_222AGL2DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formationUpstream-120
Matrix_358AGL15Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo studyUpstream-121
Matrix_386AGL1DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formationUpstream-120
Matrix_43AGNot availableUpstream-120
Matrix_445AGNot availableUpstream-120
Matrix_98AGIsolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUSUpstream-120
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAIntron448
Intron446
Intron444
Intron442
Intron440
Intron438
Intron436
Intron434
Intron432
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-273
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRIntron448
Intron446
Intron444
Intron442
Intron440
Intron438
Intron436
Intron434
Intron432
Intron430
Motif_6AGL1 binding site motifBinding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structuresUpstream-119
Motif_626ACGTTBOXT-box according to the nomenclature of ACGT elements; One of ACGT elements; See also ACGTABOX,ACGTCBOX, and CACGTGMOTIFUpstream-627
Motif_653INTRONLOWER3' intron-exon splice junctions; Plant intron lower sequence; Consensus sequence for plant intronsUpstream-555
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAIntron449
Intron447
Intron445
Intron443
Intron441
Intron439
Intron437
Intron435
Intron433
Intron431
Intron429
Intron427
Intron425
Intron423
Intron421
Upstream-4