| Matrix_215 | ARF1 | ARF1, a transcription factor that binds to auxin response elements | Intron | 5446 |
| Matrix_256 | IXR11;KNAT5;KNAT4;KNAT3 | Not available | Upstream | -1033 |
| Matrix_396 | AP3 | Not available | Upstream | -112 |
| | | Upstream | -762 |
| Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -113 |
| | | Upstream | -762 |
| Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -354 |
| | | Upstream | -378 |
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