Matrix_101 | ERF5 | Not available | Upstream | -671 |
| | | Upstream | -669 |
| | | Upstream | -648 |
Matrix_119 | RRTF1 | Not available | Upstream | -647 |
Matrix_127 | AtMYB15 | More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -921 |
Matrix_138 | RRTF1 | Not available | Upstream | -647 |
Matrix_143 | GATA14;GATA6;GATA5 | Not available | Upstream | -558 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -669 |
| | | Upstream | -646 |
Matrix_151 | ASIL1 | Not available | Upstream | -670 |
| | | Upstream | -647 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -670 |
| | | Upstream | -668 |
| | | Upstream | -647 |
Matrix_190 | ATERF1 | Not available | Upstream | -671 |
Matrix_208 | AP1 | Not available | Upstream | -64 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -647 |
Matrix_244 | DREB2C | Not available | Upstream | -647 |
Matrix_25 | AP3 | Not available | Upstream | -724 |
Matrix_252 | RAP2.6 | Not available | Upstream | -671 |
Matrix_261 | ATERF-1 | Not available | Upstream | -647 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -260 |
Matrix_287 | ERF2 | Not available | Upstream | -671 |
| | | Upstream | -669 |
| | | Upstream | -648 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -647 |
Matrix_334 | AT3G23230 | Not available | Upstream | -647 |
Matrix_343 | AT2G33710 | Not available | Upstream | -671 |
| | | Upstream | -648 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -669 |
| | | Upstream | -646 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -647 |
Matrix_360 | ORA59 | Not available | Upstream | -669 |
Matrix_363 | RAP2.3 | Not available | Upstream | -647 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -728 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -670 |
| | | Upstream | -669 |
| | | Upstream | -647 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -647 |
Matrix_387 | ORA47 | Not available | Upstream | -947 |
Matrix_406 | ATERF-7 | Not available | Upstream | -671 |
| | | Upstream | -669 |
| | | Upstream | -646 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -647 |
Matrix_433 | ATERF1 | Not available | Upstream | -670 |
| | | Upstream | -647 |
Matrix_448 | ATERF6 | Not available | Upstream | -670 |
| | | Upstream | -647 |
Matrix_45 | DRN | Not available | Upstream | -669 |
| | | Upstream | -646 |
Matrix_462 | ATERF-8 | Not available | Upstream | -671 |
| | | Upstream | -669 |
| | | Upstream | -646 |
Matrix_484 | ATERF13 | Not available | Upstream | -669 |
| | | Upstream | -646 |
Matrix_488 | ABF1 | Not available | Upstream | -964 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -670 |
| | | Upstream | -669 |
| | | Upstream | -647 |
Matrix_496 | ATMYB15 | Not available | Upstream | -921 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -669 |
| | | Upstream | -646 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -647 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -647 |
Matrix_517 | ERF12 | Not available | Upstream | -965 |
| | | Upstream | -669 |
Matrix_53 | MYC3 | Not available | Upstream | -954 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -679 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -951 |
Matrix_7 | PIF4 | Not available | Upstream | -952 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -647 |
Matrix_91 | CRF3 | Not available | Upstream | -647 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -735 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -764 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Downstream | 3658 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -950 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -904 |
| | | Upstream | -755 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Downstream | 3636 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -950 |
Motif_216 | PYRIMIDINEBOXHVEPB1 | Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction | Upstream | -731 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -951 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -910 |
| | | Upstream | -904 |
| | | Upstream | -755 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Downstream | 3605 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -551 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -693 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -758 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -904 |
| | | Upstream | -755 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -950 |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -656 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -550 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -761 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -823 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -690 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Downstream | 3667 |
| | | Downstream | 3670 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -951 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -641 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -956 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -953 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -730 |
| | | Upstream | -729 |
| | | Upstream | -683 |
| | | Upstream | -544 |
| | | Downstream | 3559 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -730 |
| | | Upstream | -544 |
| | | Downstream | 3559 |