View conserved binding sites


Gene
GM20G31730
Description
Alkaline/neutral invertase
Alias
Glyma20g31730;Glyma20g31730.1;PAC:26338076;Glyma20g31730.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-671
Upstream-669
Upstream-648
Matrix_119RRTF1Not availableUpstream-647
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-921
Matrix_138RRTF1Not availableUpstream-647
Matrix_143GATA14;GATA6;GATA5Not availableUpstream-558
Matrix_147ERF3;AT1G80580Not availableUpstream-669
Upstream-646
Matrix_151ASIL1Not availableUpstream-670
Upstream-647
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-670
Upstream-668
Upstream-647
Matrix_190ATERF1Not availableUpstream-671
Matrix_208AP1Not availableUpstream-64
Matrix_243RAP2.12;RAP2.2Not availableUpstream-647
Matrix_244DREB2CNot availableUpstream-647
Matrix_25AP3Not availableUpstream-724
Matrix_252RAP2.6Not availableUpstream-671
Matrix_261ATERF-1Not availableUpstream-647
Matrix_269FHY3/FAR1Not availableUpstream-260
Matrix_287ERF2Not availableUpstream-671
Upstream-669
Upstream-648
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-647
Matrix_334AT3G23230Not availableUpstream-647
Matrix_343AT2G33710Not availableUpstream-671
Upstream-648
Matrix_344ATERF15;AT4G18450Not availableUpstream-669
Upstream-646
Matrix_355ERF10;ERF11Not availableUpstream-647
Matrix_360ORA59Not availableUpstream-669
Matrix_363RAP2.3Not availableUpstream-647
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-728
Matrix_374AT5G07580;AT5G61590Not availableUpstream-670
Upstream-669
Upstream-647
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-647
Matrix_387ORA47Not availableUpstream-947
Matrix_406ATERF-7Not availableUpstream-671
Upstream-669
Upstream-646
Matrix_426CRF1;CRF2Not availableUpstream-647
Matrix_433ATERF1Not availableUpstream-670
Upstream-647
Matrix_448ATERF6Not availableUpstream-670
Upstream-647
Matrix_45DRNNot availableUpstream-669
Upstream-646
Matrix_462ATERF-8Not availableUpstream-671
Upstream-669
Upstream-646
Matrix_484ATERF13Not availableUpstream-669
Upstream-646
Matrix_488ABF1Not availableUpstream-964
Matrix_493AT1G22985;AT1G71130Not availableUpstream-670
Upstream-669
Upstream-647
Matrix_496ATMYB15Not availableUpstream-921
Matrix_5AT5G51190;ERF104Not availableUpstream-669
Upstream-646
Matrix_50ATERF14;AT5G43410Not availableUpstream-647
Matrix_506DRNL;ATERF-4Not availableUpstream-647
Matrix_517ERF12Not availableUpstream-965
Upstream-669
Matrix_53MYC3Not availableUpstream-954
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-679
Matrix_65POC1;PIL1Not availableUpstream-951
Matrix_7PIF4Not availableUpstream-952
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-647
Matrix_91CRF3Not availableUpstream-647
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-735
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-764
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFDownstream3658
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-950
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-904
Upstream-755
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisDownstream3636
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-950
Motif_216PYRIMIDINEBOXHVEPB1Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA inductionUpstream-731
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-951
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-910
Upstream-904
Upstream-755
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream3605
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-551
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-693
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-758
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-904
Upstream-755
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-950
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-656
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-550
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-761
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-823
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-690
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Downstream3667
Downstream3670
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-951
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-641
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-956
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-953
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-730
Upstream-729
Upstream-683
Upstream-544
Downstream3559
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-730
Upstream-544
Downstream3559