View conserved binding sites


Gene
GM20G30620
Description
Fructose-1,6-bisphosphatase class 1
Alias
Glyma20g30620;Glyma20g30620.1;PAC:26339231;Glyma20g30620.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-356
Matrix_106AT5G47390Not availableUpstream-402
Matrix_109GBF3Not availableUpstream-354
Matrix_113ABI5Not availableUpstream-354
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-359
Matrix_122ABF1;AREB2Not availableUpstream-355
Matrix_129ABF1Not availableUpstream-355
Matrix_134ABF1Not availableUpstream-355
Matrix_145GBF4;AT5G44080Not availableUpstream-354
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-359
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-384
Upstream-381
Matrix_192FHY3/FAR1Not availableUpstream-354
Matrix_194HYH;HY5Not availableUpstream-358
Matrix_214AP1Not availableUpstream-357
Matrix_227AT1G64620Not availableUpstream-1485
Matrix_24POC1Not availableUpstream-359
Matrix_244DREB2CNot availableUpstream-396
Matrix_25AP3Not availableUpstream-304
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-358
Matrix_264ATAREB1Not availableUpstream-358
Upstream-355
Matrix_271AT3G16350Not availableUpstream-402
Matrix_296GBF2Not availableUpstream-354
Matrix_300bZIP68;bZIP16Not availableUpstream-354
Matrix_301PIL5Not availableUpstream-354
Matrix_331GBF1Not availableUpstream-354
Matrix_338AP2Not availableUpstream-358
Matrix_345POC1Not availableUpstream-359
Matrix_356PRR5Not availableUpstream-362
Matrix_385DEAR4Not availableUpstream-396
Matrix_403BZR1Not availableUpstream-357
Matrix_443AGL15Not availableUpstream-357
Matrix_48PINot availableUpstream-376
Matrix_488ABF1Not availableUpstream-363
Matrix_55PIF3Not availableUpstream-356
Matrix_6AT1G70000Not availableUpstream-402
Matrix_60AT1G01260;AT5G57150Not availableUpstream-354
Matrix_65POC1;PIL1Not availableUpstream-354
Matrix_7PIF4Not availableUpstream-353
Matrix_77PRR5Not availableUpstream-356
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-400
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-353
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-353
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-354
Upstream-353
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-343
Motif_244ABRE-like binding site motifNot availableUpstream-355
Upstream-353
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-353
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-399
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-318
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-353
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-354
Motif_498SGBFGMGMAUX28bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoterUpstream-355
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-408
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseUpstream-399
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-352
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-399
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-408
Motif_667TATABOXOSPALBinding site for OsTBP2, found in the promoter of rice pal gene encoding phenylalanine ammonia-lyase; OsTFIIB stimulated the DNA binding and bending activities of OsTBP2 and synergistically enhanced OsTBP2-mediated transcription from the pal promoterUpstream-794
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-352