View conserved binding sites


Gene
GM19G39080
Description
Probable glutamate carboxypeptidase 2
Alias
Glyma19g39080;Glyma19g39080.1;PAC:26327750;Glyma19g39080.1
Binding siteNameDescriptionLocationPosition
Matrix_169E2F1Not availableDownstream5509
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-962
Matrix_34RAV1_2RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsDownstream5511
Matrix_402TOE1Not availableDownstream5527
Matrix_410TOE2Not availableDownstream5527
Matrix_467RAV1Not availableDownstream5511
Matrix_477RAV1Not availableDownstream5511
Matrix_84AtGRF6Not availableDownstream5511
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREDownstream5508
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-94
Upstream-91
Upstream-88
Upstream-85
Upstream-82
Upstream-79
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesDownstream5517
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionDownstream5562
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsDownstream5509
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesDownstream5561
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseDownstream5562
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-17
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Downstream5562