View conserved binding sites


Gene
GM19G33901
Description
Patatin group M
Alias
Glyma19g33901;Glyma19g33901.1;PAC:26329162;Glyma19g33901.1
Binding siteNameDescriptionLocationPosition
Matrix_116ANAC55Not availableUpstream-318
Matrix_120BEE2Not availableUpstream-330
Upstream-331
Matrix_14ZCW32;AT5G62610Not availableUpstream-330
Upstream-331
Upstream-332
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-330
Upstream-331
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-341
Upstream-342
Matrix_186FHY3Not availableUpstream-340
Upstream-341
Matrix_233MYC3Not availableUpstream-331
Upstream-332
Matrix_27ATAIB;ATNIG1Not availableUpstream-331
Upstream-332
Matrix_320MYC4Not availableUpstream-331
Upstream-332
Matrix_323BIM3Not availableUpstream-330
Upstream-331
Matrix_330MYC2;TT8Not availableUpstream-330
Upstream-331
Matrix_35YAB5;YAB3Not availableUpstream-403
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-331
Upstream-332
Matrix_369AT2G18300Not availableUpstream-328
Upstream-329
Upstream-330
Upstream-331
Upstream-334
Upstream-335
Upstream-336
Upstream-337
Matrix_389ILR3Not availableUpstream-330
Upstream-331
Matrix_437MYC2Not availableUpstream-331
Upstream-332
Matrix_449BIM2Not availableUpstream-330
Upstream-331
Matrix_465MYC4Not availableUpstream-330
Upstream-331
Matrix_476bHLH115;bHLH34Not availableUpstream-331
Upstream-332
Matrix_90BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915Not availableUpstream-331
Upstream-332
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-298
Upstream-300
Motif_134ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-321
Upstream-322
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-331
Upstream-333
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-332
Motif_190WUSATAgTarget sequence of WUS in the intron of AGAMOUS gene in ArabidopsisUpstream-455
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-332
Upstream-338
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-987
Upstream-988
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-331
Upstream-332
Upstream-343
Upstream-548
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-322
Upstream-344
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-343
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-320
Upstream-332
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-399
Motif_395RHE_elementFunctional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution PatternsUpstream-326
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-381
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-298
Upstream-300
Upstream-302
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-400
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-322
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-988
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-316
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-400
Motif_645BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-338
Motif_6492SSEEDPROTBANAPAConserved in many storage-protein gene promoters; May be important for high activity of the napA promoterUpstream-325
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-297
Upstream-299
Upstream-301
Upstream-303
Upstream-305
Upstream-307
Upstream-309
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-325