View conserved binding sites


Gene
GM19G06960
Description
hydrolase domain-containing protein 17C
Alias
Glyma19g06960;Glyma19g06960.1;PAC:26327200;Glyma19g06960.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-32
Upstream-33
Matrix_110ATABI4;AT3G57600Not availableUpstream-30
Upstream-31
Upstream-32
Upstream-33
Matrix_119RRTF1Not availableUpstream-31
Upstream-32
Matrix_122ABF1;AREB2Not availableUpstream-35
Matrix_131HDG12;EDT1;GL2;HDG8Not availableIntron570
Matrix_138RRTF1Not availableUpstream-31
Upstream-32
Matrix_14ZCW32;AT5G62610Not availableUpstream-36
Upstream-37
Matrix_146ORA47Not availableUpstream-32
Upstream-33
Matrix_147ERF3;AT1G80580Not availableUpstream-32
Upstream-33
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-2
Upstream-33
Upstream-34
Matrix_169E2F1Not availableUpstream-33
Upstream-34
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-35
Upstream-36
Matrix_184AGL15Not availableUpstream-70
Matrix_186FHY3Not availableUpstream-34
Upstream-35
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-36
Upstream-37
Matrix_190ATERF1Not availableUpstream-32
Upstream-33
Upstream-34
Matrix_224ERF1Not availableUpstream-31
Upstream-32
Matrix_231HDG2;HDG3;ATML1;HB-7Not availableUpstream-27
Matrix_234RAP2.3Not availableUpstream-32
Upstream-33
Matrix_243RAP2.12;RAP2.2Not availableUpstream-33
Upstream-34
Matrix_252RAP2.6Not availableUpstream-32
Upstream-33
Matrix_260CAMTA3Not availableUpstream-37
Matrix_261ATERF-1Not availableUpstream-32
Upstream-33
Matrix_272DEAR4Not availableUpstream-19
Upstream-20
Upstream-32
Upstream-33
Matrix_287ERF2Not availableUpstream-32
Upstream-33
Matrix_288RAP2.3Not availableUpstream-18
Upstream-19
Upstream-31
Upstream-32
Matrix_295ERF1Not availableUpstream-32
Upstream-33
Matrix_321HRDNot availableUpstream-32
Upstream-33
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-31
Upstream-32
Matrix_330MYC2;TT8Not availableUpstream-36
Matrix_332SPT;ALCNot availableUpstream-37
Upstream-38
Matrix_334AT3G23230Not availableUpstream-2
Upstream-33
Upstream-34
Matrix_343AT2G33710Not availableUpstream-32
Upstream-33
Matrix_344ATERF15;AT4G18450Not availableUpstream-32
Matrix_355ERF10;ERF11Not availableUpstream-31
Upstream-32
Matrix_360ORA59Not availableUpstream-32
Upstream-33
Matrix_363RAP2.3Not availableUpstream-31
Upstream-32
Matrix_369AT2G18300Not availableUpstream-34
Matrix_374AT5G07580;AT5G61590Not availableUpstream-32
Upstream-33
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-32
Upstream-33
Matrix_378ATERF1Not availableUpstream-32
Upstream-33
Matrix_389ILR3Not availableUpstream-36
Upstream-37
Matrix_406ATERF-7Not availableUpstream-30
Upstream-31
Matrix_409DEAR3Not availableUpstream-31
Upstream-32
Matrix_426CRF1;CRF2Not availableUpstream-2
Upstream-33
Upstream-34
Matrix_448ATERF6Not availableUpstream-31
Upstream-32
Matrix_45DRNNot availableUpstream-32
Upstream-33
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-31
Upstream-32
Matrix_462ATERF-8Not availableUpstream-30
Upstream-31
Matrix_473RRTF1Not availableUpstream-32
Upstream-33
Matrix_475AT5G64220Not availableUpstream-34
Upstream-35
Matrix_476bHLH115;bHLH34Not availableUpstream-37
Upstream-38
Matrix_484ATERF13Not availableUpstream-32
Upstream-33
Matrix_488ABF1Not availableUpstream-20
Upstream-21
Matrix_49FHY3/FAR1Not availableUpstream-32
Upstream-33
Matrix_493AT1G22985;AT1G71130Not availableUpstream-32
Upstream-33
Matrix_5AT5G51190;ERF104Not availableUpstream-32
Upstream-33
Matrix_50ATERF14;AT5G43410Not availableUpstream-31
Upstream-32
Matrix_506DRNL;ATERF-4Not availableUpstream-2
Upstream-33
Upstream-34
Matrix_517ERF12Not availableUpstream-32
Upstream-33
Matrix_53MYC3Not availableUpstream-34
Upstream-35
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-31
Upstream-32
Matrix_77PRR5Not availableUpstream-34
Upstream-35
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-2
Upstream-33
Upstream-34
Matrix_91CRF3Not availableUpstream-32
Upstream-33
Motif_177-300MOTIFZMZEINMotif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bindUpstream-8
Motif_199GCN4OSGLUB1GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expressionUpstream-9
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-37
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-152
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-1
Upstream-33
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-24
Upstream-37
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-6
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-5
Motif_512GLMHVCHORDGLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoterUpstream-8
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-6
Motif_585ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDHPRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in ArabidopsisUpstream-11
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-50
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-146
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-71
Upstream-77
Motif_80AP1SV40AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)Upstream-9
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisUpstream-325
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-42