Matrix_101 | ERF5 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -30 |
| | | Upstream | -31 |
| | | Upstream | -32 |
| | | Upstream | -33 |
Matrix_119 | RRTF1 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -35 |
Matrix_131 | HDG12;EDT1;GL2;HDG8 | Not available | Intron | 570 |
Matrix_138 | RRTF1 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -36 |
| | | Upstream | -37 |
Matrix_146 | ORA47 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -2 |
| | | Upstream | -33 |
| | | Upstream | -34 |
Matrix_169 | E2F1 | Not available | Upstream | -33 |
| | | Upstream | -34 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -35 |
| | | Upstream | -36 |
Matrix_184 | AGL15 | Not available | Upstream | -70 |
Matrix_186 | FHY3 | Not available | Upstream | -34 |
| | | Upstream | -35 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -36 |
| | | Upstream | -37 |
Matrix_190 | ATERF1 | Not available | Upstream | -32 |
| | | Upstream | -33 |
| | | Upstream | -34 |
Matrix_224 | ERF1 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_231 | HDG2;HDG3;ATML1;HB-7 | Not available | Upstream | -27 |
Matrix_234 | RAP2.3 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -33 |
| | | Upstream | -34 |
Matrix_252 | RAP2.6 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_260 | CAMTA3 | Not available | Upstream | -37 |
Matrix_261 | ATERF-1 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_272 | DEAR4 | Not available | Upstream | -19 |
| | | Upstream | -20 |
| | | Upstream | -32 |
| | | Upstream | -33 |
Matrix_287 | ERF2 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_288 | RAP2.3 | Not available | Upstream | -18 |
| | | Upstream | -19 |
| | | Upstream | -31 |
| | | Upstream | -32 |
Matrix_295 | ERF1 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_321 | HRD | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -36 |
Matrix_332 | SPT;ALC | Not available | Upstream | -37 |
| | | Upstream | -38 |
Matrix_334 | AT3G23230 | Not available | Upstream | -2 |
| | | Upstream | -33 |
| | | Upstream | -34 |
Matrix_343 | AT2G33710 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -32 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_360 | ORA59 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_363 | RAP2.3 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_369 | AT2G18300 | Not available | Upstream | -34 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_378 | ATERF1 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_389 | ILR3 | Not available | Upstream | -36 |
| | | Upstream | -37 |
Matrix_406 | ATERF-7 | Not available | Upstream | -30 |
| | | Upstream | -31 |
Matrix_409 | DEAR3 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -2 |
| | | Upstream | -33 |
| | | Upstream | -34 |
Matrix_448 | ATERF6 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_45 | DRN | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_462 | ATERF-8 | Not available | Upstream | -30 |
| | | Upstream | -31 |
Matrix_473 | RRTF1 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_475 | AT5G64220 | Not available | Upstream | -34 |
| | | Upstream | -35 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -37 |
| | | Upstream | -38 |
Matrix_484 | ATERF13 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_488 | ABF1 | Not available | Upstream | -20 |
| | | Upstream | -21 |
Matrix_49 | FHY3/FAR1 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -2 |
| | | Upstream | -33 |
| | | Upstream | -34 |
Matrix_517 | ERF12 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Matrix_53 | MYC3 | Not available | Upstream | -34 |
| | | Upstream | -35 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -31 |
| | | Upstream | -32 |
Matrix_77 | PRR5 | Not available | Upstream | -34 |
| | | Upstream | -35 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -2 |
| | | Upstream | -33 |
| | | Upstream | -34 |
Matrix_91 | CRF3 | Not available | Upstream | -32 |
| | | Upstream | -33 |
Motif_177 | -300MOTIFZMZEIN | Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind | Upstream | -8 |
Motif_199 | GCN4OSGLUB1 | GCN4 motif found in GluB-1 gene in rice; Required for endosperm-specific expression; AACA and ACGT motifs was found sufficient to confer a detectable level of endosperm expression; This motif is the recognition site for a basic leucine zipper transcription factor that belongs to the group of maize Opaque-2 (O2)-like proteins; Although all the RISBZ proteins are able to interact with the GCN4 motif, only RISBZ1 is capable of activating the gene expression | Upstream | -9 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -37 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -152 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -1 |
| | | Upstream | -33 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -24 |
| | | Upstream | -37 |
Motif_383 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -6 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -5 |
Motif_512 | GLMHVCHORD | GLM (GCN4-like motif) found in the promoter of barley B1- and c-hordein gene; Involved in the nitrogen response of c-hordein promoter; SPA, a seed-specific basic leucine zipper protein from wheat, can activate transcription from the GCN4-like motif (GLM) of -326 LMWG-1D1 promoter | Upstream | -8 |
Motif_584 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -6 |
Motif_585 | ATB2/AtbZIP53/AtbZIP44/GBF5 BS in ProDH | PRE (Pro- or hypoosmolarity-responsive element) found in the promoter region of proline dehydrogenase (ProDH) gene in Arabidopsis; Core of 9-bp sequence ACTCATCCT which is necessary for the efficient expression of ProDH in response to L-Pro and hypoosmolarity; ATB2-binding site; Similar to GCN4 motif (ATGA(C/G)TCAT); ATB2 subgroup of bZIP transcription factors function as transcriptional activator for hypoosmolarity-inducible ProDH; A Novel Subgroup of bZIP Proteins Functions as Transctiptional Activators in Hypsosmolarity-Responsive Expression of the ProDH gene in Arabidopsis | Upstream | -11 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -50 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -146 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -71 |
| | | Upstream | -77 |
Motif_80 | AP1SV40 | AP-1 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | Upstream | -9 |
Motif_88 | MYB2AT | Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis | Upstream | -325 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -42 |