Matrix_101 | ERF5 | Not available | Upstream | -1972 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -1957 |
| | | Upstream | -1955 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -1953 |
Matrix_174 | ZAT2 | Not available | Upstream | -41 |
Matrix_190 | ATERF1 | Not available | Upstream | -1957 |
| | | Upstream | -1955 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1972 |
| | | Upstream | -1957 |
| | | Upstream | -1955 |
Matrix_261 | ATERF-1 | Not available | Upstream | -1971 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -1955 |
Matrix_287 | ERF2 | Not available | Upstream | -1972 |
Matrix_295 | ERF1 | Not available | Upstream | -1970 |
Matrix_321 | HRD | Not available | Upstream | -1971 |
Matrix_334 | AT3G23230 | Not available | Upstream | -1971 |
| | | Upstream | -1953 |
Matrix_343 | AT2G33710 | Not available | Upstream | -1972 |
Matrix_360 | ORA59 | Not available | Upstream | -1970 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -1971 |
Matrix_378 | ATERF1 | Not available | Upstream | -1972 |
Matrix_406 | ATERF-7 | Not available | Upstream | -1970 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -1971 |
| | | Upstream | -1953 |
Matrix_45 | DRN | Not available | Upstream | -1970 |
Matrix_463 | HAT3.1 | Not available | Upstream | -1957 |
Matrix_484 | ATERF13 | Not available | Upstream | -1970 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -1971 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -1952 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -1971 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -1938 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -1971 |
| | | Upstream | -1953 |
Matrix_91 | CRF3 | Not available | Upstream | -1971 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -268 |
Motif_159 | LFY | Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins | Upstream | -92 |
Motif_184 | PROXBBNNAPA | prox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | Upstream | -82 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -249 |
Motif_210 | REBETALGLHCB21 | REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulation | Upstream | -296 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -266 |
| | | Upstream | -253 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -1969 |
| | | Upstream | -1951 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -1970 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -956 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Upstream | -1933 |
| | | Upstream | -40 |
Motif_464 | ARR1;ARR2 | Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activators | Upstream | -140 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -249 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -65 |
Motif_517 | LEAFYATAG | Target sequence of LEAFY in the intron of AGAMOUS gene in Arabidopsis | Upstream | -237 |
| | | Upstream | -87 |
Motif_649 | 2SSEEDPROTBANAPA | Conserved in many storage-protein gene promoters; May be important for high activity of the napA promoter | Upstream | -81 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -254 |
| | | Upstream | -11 |
| | | Upstream | -10 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -11 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Upstream | -81 |