View conserved binding sites


Gene
GM18G51100
Description
Phosphatidylinositol 4-kinase gamma 6
Alias
Glyma18g51100;Glyma18g51100.2;PAC:26356958;Glyma18g51100.2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1972
Matrix_110ATABI4;AT3G57600Not availableUpstream-1957
Upstream-1955
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-1953
Matrix_174ZAT2Not availableUpstream-41
Matrix_190ATERF1Not availableUpstream-1957
Upstream-1955
Matrix_252RAP2.6Not availableUpstream-1972
Upstream-1957
Upstream-1955
Matrix_261ATERF-1Not availableUpstream-1971
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-1955
Matrix_287ERF2Not availableUpstream-1972
Matrix_295ERF1Not availableUpstream-1970
Matrix_321HRDNot availableUpstream-1971
Matrix_334AT3G23230Not availableUpstream-1971
Upstream-1953
Matrix_343AT2G33710Not availableUpstream-1972
Matrix_360ORA59Not availableUpstream-1970
Matrix_374AT5G07580;AT5G61590Not availableUpstream-1971
Matrix_378ATERF1Not availableUpstream-1972
Matrix_406ATERF-7Not availableUpstream-1970
Matrix_426CRF1;CRF2Not availableUpstream-1971
Upstream-1953
Matrix_45DRNNot availableUpstream-1970
Matrix_463HAT3.1Not availableUpstream-1957
Matrix_484ATERF13Not availableUpstream-1970
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1971
Matrix_5AT5G51190;ERF104Not availableUpstream-1952
Matrix_506DRNL;ATERF-4Not availableUpstream-1971
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1938
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1971
Upstream-1953
Matrix_91CRF3Not availableUpstream-1971
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-268
Motif_159LFYStructural basis for LEAFY floral switch function and similarity with helix-turn-helix proteinsUpstream-92
Motif_184PROXBBNNAPAprox B (proximal portion of B-box) found in napA gene of Brassica napus; CA-rich sequence; Found between -130 and -124; Required for seed specific expression and ABA responsiveness; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-82
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-249
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-296
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-266
Upstream-253
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-1969
Upstream-1951
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-1970
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-956
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-1933
Upstream-40
Motif_464ARR1;ARR2Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activatorsUpstream-140
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-249
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-65
Motif_517LEAFYATAGTarget sequence of LEAFY in the intron of AGAMOUS gene in ArabidopsisUpstream-237
Upstream-87
Motif_6492SSEEDPROTBANAPAConserved in many storage-protein gene promoters; May be important for high activity of the napA promoterUpstream-81
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-254
Upstream-11
Upstream-10
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-11
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorUpstream-81