View conserved binding sites


Gene
GM17G37410
Description
SHI RELATED SEQUENCE
Alias
Glyma17g37410;Glyma17g37410.1;PAC:26313437;Glyma17g37410.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-506
Upstream-507
Matrix_104PINot availableUpstream-833
Upstream-834
Matrix_109GBF3Not availableUpstream-835
Upstream-836
Matrix_113ABI5Not availableUpstream-835
Upstream-836
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-830
Upstream-831
Matrix_119RRTF1Not availableUpstream-507
Upstream-508
Matrix_122ABF1;AREB2Not availableUpstream-834
Upstream-835
Matrix_124AtHB23;ATHB13;ATHB20;ATHB5Not availableUpstream-474
Matrix_129ABF1Not availableUpstream-834
Upstream-835
Matrix_134ABF1Not availableUpstream-834
Upstream-835
Matrix_138RRTF1Not availableUpstream-507
Upstream-508
Matrix_145GBF4;AT5G44080Not availableUpstream-835
Upstream-836
Matrix_146ORA47Not availableUpstream-506
Upstream-507
Matrix_147ERF3;AT1G80580Not availableUpstream-508
Upstream-509
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-830
Upstream-831
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-508
Upstream-509
Upstream-756
Matrix_181Dof5.7Not availableDownstream2256
Matrix_192FHY3/FAR1Not availableUpstream-835
Upstream-836
Matrix_194HYH;HY5Not availableUpstream-831
Upstream-832
Matrix_209RAP2.6Not availableUpstream-508
Matrix_214AP1Not availableUpstream-832
Upstream-833
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-835
Upstream-836
Matrix_224ERF1Not availableUpstream-507
Upstream-508
Matrix_234RAP2.3Not availableUpstream-506
Upstream-507
Matrix_24POC1Not availableUpstream-830
Upstream-831
Matrix_250ADAP;AT1G79700;WRI1;ANTNot availableDownstream2094
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-831
Upstream-832
Matrix_252RAP2.6Not availableUpstream-506
Upstream-507
Matrix_261ATERF-1Not availableUpstream-507
Upstream-508
Matrix_264ATAREB1Not availableUpstream-834
Upstream-835
Matrix_270ANTDNA binding properties of the Arabidopsis floral development protein AINTEGUMENTADownstream2092
Matrix_277RAP2.6Not availableUpstream-507
Upstream-508
Matrix_285DDF1Not availableUpstream-508
Upstream-509
Matrix_287ERF2Not availableUpstream-506
Upstream-507
Matrix_288RAP2.3Not availableUpstream-310
Upstream-507
Upstream-508
Matrix_295ERF1Not availableUpstream-508
Upstream-509
Matrix_296GBF2Not availableUpstream-835
Upstream-836
Matrix_300bZIP68;bZIP16Not availableUpstream-835
Upstream-836
Matrix_301PIL5Not availableUpstream-835
Upstream-836
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-507
Upstream-508
Matrix_331GBF1Not availableUpstream-835
Upstream-836
Matrix_334AT3G23230Not availableUpstream-507
Upstream-508
Matrix_338AP2Not availableUpstream-831
Upstream-832
Matrix_343AT2G33710Not availableUpstream-506
Upstream-507
Matrix_345POC1Not availableUpstream-830
Upstream-831
Matrix_355ERF10;ERF11Not availableUpstream-507
Upstream-508
Matrix_356PRR5Not availableUpstream-827
Upstream-828
Upstream-831
Upstream-832
Matrix_360ORA59Not availableUpstream-508
Upstream-509
Matrix_363RAP2.3Not availableUpstream-507
Upstream-508
Matrix_374AT5G07580;AT5G61590Not availableUpstream-507
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-507
Upstream-508
Matrix_378ATERF1Not availableUpstream-506
Upstream-507
Matrix_381ATHB9Not availableUpstream-473
Matrix_403BZR1Not availableUpstream-832
Upstream-833
Matrix_406ATERF-7Not availableUpstream-508
Upstream-509
Matrix_407AP1Not availableDownstream1945
Matrix_409DEAR3Not availableUpstream-507
Upstream-508
Matrix_426CRF1;CRF2Not availableUpstream-507
Upstream-508
Matrix_443AGL15Not availableUpstream-832
Upstream-833
Matrix_45DRNNot availableUpstream-508
Upstream-509
Matrix_459ATHB9;CNA;PHB;ATHB-8;REVNot availableUpstream-473
Matrix_462ATERF-8Not availableUpstream-508
Upstream-509
Matrix_468ATHB9The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteinsUpstream-473
Matrix_473RRTF1Not availableUpstream-506
Upstream-507
Matrix_484ATERF13Not availableUpstream-508
Upstream-509
Matrix_488ABF1Not availableUpstream-826
Upstream-827
Upstream-833
Upstream-834
Matrix_493AT1G22985;AT1G71130Not availableUpstream-507
Upstream-508
Matrix_50ATERF14;AT5G43410Not availableUpstream-507
Upstream-508
Matrix_506DRNL;ATERF-4Not availableUpstream-507
Upstream-508
Matrix_517ERF12Not availableUpstream-508
Upstream-509
Matrix_53MYC3Not availableUpstream-836
Upstream-837
Matrix_55PIF3Not availableUpstream-833
Upstream-834
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-507
Upstream-508
Matrix_60AT1G01260;AT5G57150Not availableUpstream-835
Matrix_65POC1;PIL1Not availableUpstream-835
Matrix_7PIF4Not availableUpstream-836
Upstream-837
Matrix_74LFYNot availableDownstream1946
Matrix_77PRR5Not availableUpstream-833
Upstream-834
Matrix_80BIM1Not availableUpstream-835
Upstream-836
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-507
Upstream-508
Matrix_91CRF3Not availableUpstream-507
Upstream-508
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceDownstream2243
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-34
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterDownstream2327
Intron1076
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-642
Upstream-644
Upstream-646
Upstream-648
Upstream-650
Upstream-652
Upstream-654
Motif_134ANAC092NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in ArabidopsisUpstream-838
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Downstream2333
Downstream1943
Motif_15AMYBOX2amylase box; amylase element; Conserved sequence found in 5'upstream region of alpha-amylase gene of rice, wheat, barleyUpstream-50
Motif_153MARABOX1A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)Upstream-856
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-836
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Downstream2272
Upstream-519
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroDownstream2234
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Downstream2083
Upstream-519
Upstream-836
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-835
Upstream-836
Motif_22RYREPEATLEGUMINBOXRY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybeanDownstream2541
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisDownstream2272
Intron1084
Upstream-10
Upstream-519
Motif_235C8GCARGATBinding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)Upstream-914
Motif_244ABRE-like binding site motifNot availableUpstream-834
Upstream-836
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-836
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesDownstream2316
Downstream2234
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightIntron1074
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesDownstream2233
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionUpstream-50
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-44
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-509
Motif_323MYB1LEPRTomato Pti4(ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1(GTTAGTT), G box (CACGTG))Intron1099
Motif_336MYBMOUSEBinding site for mouse c-myb proteinDownstream2272
Upstream-519
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-836
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-860
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationDownstream2317
Downstream2275
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-907
Motif_404AACACOREOSGLUB1Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoterDownstream1918
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorDownstream1940
Downstream1919
Upstream-856
Motif_414ABI3Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene productDownstream2542
Motif_419MYB4 binding site motifNot availableDownstream2316
Downstream2234
Downstream1918
Intron1099
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisDownstream2234
Motif_43CCA1 binding site motifCCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb geneUpstream-922
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-642
Upstream-644
Upstream-646
Upstream-648
Upstream-650
Upstream-652
Upstream-654
Upstream-656
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-835
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsDownstream2281
Downstream2260
Motif_464ARR1;ARR2Arabidopsis ARR1 and ARR2 response regulators operate as transcriptional activatorsUpstream-920
Motif_498SGBFGMGMAUX28bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoterUpstream-834
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisDownstream2235
Motif_511RYREPEATGMGY2RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2)Downstream2541
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-523
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1939
Downstream1918
Upstream-856
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-253
Upstream-254
Upstream-255
Upstream-256
Upstream-257
Upstream-258
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream2318
Downstream2276
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-837
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Downstream2087
Upstream-50
Motif_630WBOXNTCHN48W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobaccoUpstream-195
Upstream-903
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREDownstream2540
Motif_6492SSEEDPROTBANAPAConserved in many storage-protein gene promoters; May be important for high activity of the napA promoterDownstream2314
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-884
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream2300
Downstream2267
Downstream2257
Upstream-45
Upstream-878
Upstream-896
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesDownstream2317
Downstream2235
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream1939
Downstream1918
Upstream-856
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-896
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-642
Upstream-644
Upstream-646
Upstream-648
Upstream-650
Upstream-652
Upstream-654
Upstream-656
Upstream-658
Upstream-660
Upstream-662
Upstream-794
Upstream-796
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorDownstream2314
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-837