Matrix_101 | ERF5 | Not available | Upstream | -2 |
| | | Upstream | -198 |
| | | Upstream | -201 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -4 |
| | | Upstream | -199 |
| | | Upstream | -201 |
| | | Upstream | -202 |
| | | Upstream | -285 |
| | | Upstream | -286 |
| | | Upstream | -650 |
| | | Upstream | -702 |
Matrix_113 | ABI5 | Not available | Upstream | -543 |
Matrix_119 | RRTF1 | Not available | Upstream | -197 |
| | | Upstream | -200 |
Matrix_12 | EIN3;EIL2 | Not available | Upstream | -285 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -385 |
| | | Upstream | -542 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -386 |
Matrix_146 | ORA47 | Not available | Upstream | -2 |
| | | Upstream | -201 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -4 |
| | | Upstream | -201 |
Matrix_151 | ASIL1 | Not available | Upstream | -164 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -3 |
| | | Upstream | -201 |
| | | Upstream | -202 |
Matrix_156 | POC1 | Not available | Upstream | -541 |
Matrix_180 | SPL1 | Not available | Upstream | -174 |
| | | Upstream | -175 |
| | | Upstream | -291 |
| | | Upstream | -292 |
Matrix_190 | ATERF1 | Not available | Upstream | -198 |
| | | Upstream | -199 |
| | | Upstream | -201 |
| | | Upstream | -202 |
Matrix_201 | AT1G74840 | Not available | Upstream | -166 |
Matrix_224 | ERF1 | Not available | Upstream | -3 |
| | | Upstream | -200 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -201 |
Matrix_247 | PIF3 | Not available | Upstream | -542 |
Matrix_252 | RAP2.6 | Not available | Upstream | -2 |
| | | Upstream | -201 |
Matrix_261 | ATERF-1 | Not available | Upstream | -3 |
| | | Upstream | -198 |
| | | Upstream | -201 |
Matrix_264 | ATAREB1 | Not available | Upstream | -542 |
Matrix_272 | DEAR4 | Not available | Upstream | -2 |
| | | Upstream | -201 |
Matrix_287 | ERF2 | Not available | Upstream | -2 |
| | | Upstream | -201 |
Matrix_295 | ERF1 | Not available | Upstream | -4 |
| | | Upstream | -201 |
Matrix_301 | PIL5 | Not available | Upstream | -485 |
| | | Upstream | -919 |
Matrix_321 | HRD | Not available | Upstream | -201 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -3 |
| | | Upstream | -197 |
| | | Upstream | -200 |
Matrix_332 | SPT;ALC | Not available | Upstream | -385 |
| | | Upstream | -542 |
Matrix_333 | GATA3 | Not available | Upstream | -168 |
| | | Upstream | -169 |
Matrix_334 | AT3G23230 | Not available | Upstream | -3 |
| | | Upstream | -201 |
| | | Upstream | -202 |
Matrix_338 | AP2 | Not available | Upstream | -539 |
Matrix_343 | AT2G33710 | Not available | Upstream | -2 |
| | | Upstream | -198 |
| | | Upstream | -201 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -201 |
Matrix_35 | YAB5;YAB3 | Not available | Upstream | -74 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -3 |
| | | Upstream | -197 |
| | | Upstream | -200 |
Matrix_356 | PRR5 | Not available | Upstream | -483 |
| | | Upstream | -535 |
Matrix_360 | ORA59 | Not available | Upstream | -4 |
| | | Upstream | -201 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -3 |
| | | Upstream | -198 |
| | | Upstream | -201 |
Matrix_378 | ATERF1 | Not available | Upstream | -2 |
| | | Upstream | -201 |
Matrix_396 | AP3 | Not available | Upstream | -341 |
Matrix_406 | ATERF-7 | Not available | Upstream | -4 |
| | | Upstream | -199 |
Matrix_409 | DEAR3 | Not available | Upstream | -3 |
| | | Upstream | -200 |
Matrix_421 | GLK1 | Not available | Upstream | -168 |
| | | Upstream | -169 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -3 |
| | | Upstream | -199 |
| | | Upstream | -201 |
| | | Upstream | -202 |
Matrix_443 | AGL15 | Not available | Upstream | -540 |
Matrix_448 | ATERF6 | Not available | Upstream | -200 |
Matrix_45 | DRN | Not available | Upstream | -4 |
| | | Upstream | -201 |
Matrix_450 | SPL7 | Not available | Upstream | -293 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -200 |
Matrix_462 | ATERF-8 | Not available | Upstream | -4 |
| | | Upstream | -199 |
Matrix_463 | HAT3.1 | Not available | Upstream | -287 |
| | | Upstream | -288 |
| | | Upstream | -704 |
Matrix_473 | RRTF1 | Not available | Upstream | -198 |
| | | Upstream | -201 |
Matrix_484 | ATERF13 | Not available | Upstream | -4 |
| | | Upstream | -201 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -3 |
| | | Upstream | -198 |
| | | Upstream | -201 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -3 |
| | | Upstream | -200 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -3 |
| | | Upstream | -199 |
| | | Upstream | -201 |
| | | Upstream | -202 |
Matrix_517 | ERF12 | Not available | Upstream | -4 |
| | | Upstream | -201 |
Matrix_55 | PIF3 | Not available | Upstream | -541 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -3 |
| | | Upstream | -197 |
| | | Upstream | -200 |
Matrix_7 | PIF4 | Not available | Upstream | -542 |
Matrix_77 | PRR5 | Not available | Upstream | -541 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -3 |
| | | Upstream | -201 |
| | | Upstream | -202 |
Matrix_91 | CRF3 | Not available | Upstream | -3 |
| | | Upstream | -198 |
| | | Upstream | -201 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -211 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -320 |
Motif_216 | PYRIMIDINEBOXHVEPB1 | Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA induction | Upstream | -329 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -71 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -65 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -157 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -201 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -304 |
| | | Upstream | -386 |
| | | Upstream | -491 |
| | | Upstream | -543 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -65 |
| | | Upstream | -342 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -236 |
| | | Upstream | -244 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -749 |
Motif_43 | CCA1 binding site motif | CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene | Upstream | -18 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -315 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -293 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -334 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -237 |
| | | Upstream | -245 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -216 |
| | | Upstream | -329 |
| | | Upstream | -330 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -216 |
| | | Upstream | -330 |
Motif_90 | GT1MOTIFPSRBCS | GT-1 motif; Consensus sequence of rbcS BOX II, III, II', III'; GT-1 box; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See GT1CORE | Upstream | -325 |