View conserved binding sites


Gene
GM17G35890
Description
Polyadenylate-binding protein, cytoplasmic and nuclear
Alias
Glyma17g35890;Glyma17g35890.1;PAC:26311340;Glyma17g35890.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-2
Upstream-198
Upstream-201
Matrix_110ATABI4;AT3G57600Not availableUpstream-4
Upstream-199
Upstream-201
Upstream-202
Upstream-285
Upstream-286
Upstream-650
Upstream-702
Matrix_113ABI5Not availableUpstream-543
Matrix_119RRTF1Not availableUpstream-197
Upstream-200
Matrix_12EIN3;EIL2Not availableUpstream-285
Matrix_122ABF1;AREB2Not availableUpstream-385
Upstream-542
Matrix_14ZCW32;AT5G62610Not availableUpstream-386
Matrix_146ORA47Not availableUpstream-2
Upstream-201
Matrix_147ERF3;AT1G80580Not availableUpstream-4
Upstream-201
Matrix_151ASIL1Not availableUpstream-164
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-3
Upstream-201
Upstream-202
Matrix_156POC1Not availableUpstream-541
Matrix_180SPL1Not availableUpstream-174
Upstream-175
Upstream-291
Upstream-292
Matrix_190ATERF1Not availableUpstream-198
Upstream-199
Upstream-201
Upstream-202
Matrix_201AT1G74840Not availableUpstream-166
Matrix_224ERF1Not availableUpstream-3
Upstream-200
Matrix_243RAP2.12;RAP2.2Not availableUpstream-201
Matrix_247PIF3Not availableUpstream-542
Matrix_252RAP2.6Not availableUpstream-2
Upstream-201
Matrix_261ATERF-1Not availableUpstream-3
Upstream-198
Upstream-201
Matrix_264ATAREB1Not availableUpstream-542
Matrix_272DEAR4Not availableUpstream-2
Upstream-201
Matrix_287ERF2Not availableUpstream-2
Upstream-201
Matrix_295ERF1Not availableUpstream-4
Upstream-201
Matrix_301PIL5Not availableUpstream-485
Upstream-919
Matrix_321HRDNot availableUpstream-201
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-3
Upstream-197
Upstream-200
Matrix_332SPT;ALCNot availableUpstream-385
Upstream-542
Matrix_333GATA3Not availableUpstream-168
Upstream-169
Matrix_334AT3G23230Not availableUpstream-3
Upstream-201
Upstream-202
Matrix_338AP2Not availableUpstream-539
Matrix_343AT2G33710Not availableUpstream-2
Upstream-198
Upstream-201
Matrix_344ATERF15;AT4G18450Not availableUpstream-201
Matrix_35YAB5;YAB3Not availableUpstream-74
Matrix_355ERF10;ERF11Not availableUpstream-3
Upstream-197
Upstream-200
Matrix_356PRR5Not availableUpstream-483
Upstream-535
Matrix_360ORA59Not availableUpstream-4
Upstream-201
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-3
Upstream-198
Upstream-201
Matrix_378ATERF1Not availableUpstream-2
Upstream-201
Matrix_396AP3Not availableUpstream-341
Matrix_406ATERF-7Not availableUpstream-4
Upstream-199
Matrix_409DEAR3Not availableUpstream-3
Upstream-200
Matrix_421GLK1Not availableUpstream-168
Upstream-169
Matrix_426CRF1;CRF2Not availableUpstream-3
Upstream-199
Upstream-201
Upstream-202
Matrix_443AGL15Not availableUpstream-540
Matrix_448ATERF6Not availableUpstream-200
Matrix_45DRNNot availableUpstream-4
Upstream-201
Matrix_450SPL7Not availableUpstream-293
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-200
Matrix_462ATERF-8Not availableUpstream-4
Upstream-199
Matrix_463HAT3.1Not availableUpstream-287
Upstream-288
Upstream-704
Matrix_473RRTF1Not availableUpstream-198
Upstream-201
Matrix_484ATERF13Not availableUpstream-4
Upstream-201
Matrix_493AT1G22985;AT1G71130Not availableUpstream-3
Upstream-198
Upstream-201
Matrix_50ATERF14;AT5G43410Not availableUpstream-3
Upstream-200
Matrix_506DRNL;ATERF-4Not availableUpstream-3
Upstream-199
Upstream-201
Upstream-202
Matrix_517ERF12Not availableUpstream-4
Upstream-201
Matrix_55PIF3Not availableUpstream-541
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-3
Upstream-197
Upstream-200
Matrix_7PIF4Not availableUpstream-542
Matrix_77PRR5Not availableUpstream-541
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-3
Upstream-201
Upstream-202
Matrix_91CRF3Not availableUpstream-3
Upstream-198
Upstream-201
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-211
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-320
Motif_216PYRIMIDINEBOXHVEPB1Pyrimidine box found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -120 to -113; Required for GA inductionUpstream-329
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-71
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-65
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-157
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-201
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-304
Upstream-386
Upstream-491
Upstream-543
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-65
Upstream-342
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-236
Upstream-244
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-749
Motif_43CCA1 binding site motifCCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb geneUpstream-18
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-315
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-293
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-334
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-237
Upstream-245
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-216
Upstream-329
Upstream-330
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-216
Upstream-330
Motif_90GT1MOTIFPSRBCSGT-1 motif; Consensus sequence of rbcS BOX II, III, II', III'; GT-1 box; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See GT1COREUpstream-325