View conserved binding sites


Gene
GM17G33985
Description
POZ domain-containing protein NPY1
Alias
Glyma17g33985;Glyma17g33985.1;PAC:26313810;Glyma17g33985.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-542
Matrix_138RRTF1Not availableUpstream-543
Upstream-544
Matrix_146ORA47Not availableUpstream-542
Upstream-543
Matrix_147ERF3;AT1G80580Not availableUpstream-544
Upstream-545
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-543
Matrix_190ATERF1Not availableUpstream-541
Upstream-542
Matrix_224ERF1Not availableUpstream-543
Upstream-544
Matrix_234RAP2.3Not availableUpstream-542
Upstream-543
Matrix_252RAP2.6Not availableUpstream-542
Matrix_261ATERF-1Not availableUpstream-543
Upstream-544
Matrix_269FHY3/FAR1Not availableUpstream-659
Upstream-662
Upstream-665
Matrix_272DEAR4Not availableUpstream-542
Upstream-543
Matrix_287ERF2Not availableUpstream-542
Matrix_288RAP2.3Not availableUpstream-543
Matrix_290AP2Not availableIntron479
Matrix_295ERF1Not availableUpstream-544
Upstream-545
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-543
Matrix_334AT3G23230Not availableUpstream-543
Upstream-544
Matrix_343AT2G33710Not availableUpstream-542
Matrix_355ERF10;ERF11Not availableUpstream-543
Upstream-544
Matrix_360ORA59Not availableUpstream-544
Upstream-545
Matrix_363RAP2.3Not availableUpstream-543
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-543
Matrix_378ATERF1Not availableUpstream-542
Upstream-543
Matrix_405DREB2CNot availableUpstream-541
Matrix_406ATERF-7Not availableUpstream-544
Upstream-545
Matrix_407AP1Not availableUpstream-90
Matrix_409DEAR3Not availableUpstream-543
Upstream-544
Matrix_426CRF1;CRF2Not availableUpstream-543
Upstream-544
Matrix_45DRNNot availableUpstream-544
Upstream-545
Matrix_462ATERF-8Not availableUpstream-544
Upstream-545
Matrix_473RRTF1Not availableUpstream-542
Matrix_48PINot availableUpstream-755
Matrix_484ATERF13Not availableUpstream-544
Upstream-545
Matrix_493AT1G22985;AT1G71130Not availableUpstream-543
Matrix_497AP3Not availableUpstream-89
Upstream-90
Matrix_50ATERF14;AT5G43410Not availableUpstream-543
Upstream-544
Matrix_506DRNL;ATERF-4Not availableUpstream-543
Upstream-544
Matrix_517ERF12Not availableUpstream-544
Upstream-545
Matrix_74LFYNot availableUpstream-89
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-543
Upstream-544
Matrix_91CRF3Not availableUpstream-543
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-92
Upstream-189
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-603
Motif_183TRANSINITDICOTSContext sequence of translational initiation codon in dicotsUpstream-513
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-33
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-545
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-533
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-534
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisUpstream-517
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-556
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-32
Upstream-37
Upstream-89
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-523
Motif_419MYB4 binding site motifNot availableUpstream-33
Upstream-193
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-46
Upstream-880
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-513
Motif_502MYB98The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98Upstream-889
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-659
Upstream-662
Upstream-665
Upstream-668
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-1166
Upstream-1167
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-36
Upstream-88
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-511
Upstream-531
Upstream-731
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-32
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-511
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-752
Motif_70CANBNNAPACore of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressorDownstream4382