Matrix_101 | ERF5 | Not available | Upstream | -542 |
Matrix_138 | RRTF1 | Not available | Upstream | -543 |
| | | Upstream | -544 |
Matrix_146 | ORA47 | Not available | Upstream | -542 |
| | | Upstream | -543 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -544 |
| | | Upstream | -545 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -543 |
Matrix_190 | ATERF1 | Not available | Upstream | -541 |
| | | Upstream | -542 |
Matrix_224 | ERF1 | Not available | Upstream | -543 |
| | | Upstream | -544 |
Matrix_234 | RAP2.3 | Not available | Upstream | -542 |
| | | Upstream | -543 |
Matrix_252 | RAP2.6 | Not available | Upstream | -542 |
Matrix_261 | ATERF-1 | Not available | Upstream | -543 |
| | | Upstream | -544 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -659 |
| | | Upstream | -662 |
| | | Upstream | -665 |
Matrix_272 | DEAR4 | Not available | Upstream | -542 |
| | | Upstream | -543 |
Matrix_287 | ERF2 | Not available | Upstream | -542 |
Matrix_288 | RAP2.3 | Not available | Upstream | -543 |
Matrix_290 | AP2 | Not available | Intron | 479 |
Matrix_295 | ERF1 | Not available | Upstream | -544 |
| | | Upstream | -545 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -543 |
Matrix_334 | AT3G23230 | Not available | Upstream | -543 |
| | | Upstream | -544 |
Matrix_343 | AT2G33710 | Not available | Upstream | -542 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -543 |
| | | Upstream | -544 |
Matrix_360 | ORA59 | Not available | Upstream | -544 |
| | | Upstream | -545 |
Matrix_363 | RAP2.3 | Not available | Upstream | -543 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -543 |
Matrix_378 | ATERF1 | Not available | Upstream | -542 |
| | | Upstream | -543 |
Matrix_405 | DREB2C | Not available | Upstream | -541 |
Matrix_406 | ATERF-7 | Not available | Upstream | -544 |
| | | Upstream | -545 |
Matrix_407 | AP1 | Not available | Upstream | -90 |
Matrix_409 | DEAR3 | Not available | Upstream | -543 |
| | | Upstream | -544 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -543 |
| | | Upstream | -544 |
Matrix_45 | DRN | Not available | Upstream | -544 |
| | | Upstream | -545 |
Matrix_462 | ATERF-8 | Not available | Upstream | -544 |
| | | Upstream | -545 |
Matrix_473 | RRTF1 | Not available | Upstream | -542 |
Matrix_48 | PI | Not available | Upstream | -755 |
Matrix_484 | ATERF13 | Not available | Upstream | -544 |
| | | Upstream | -545 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -543 |
Matrix_497 | AP3 | Not available | Upstream | -89 |
| | | Upstream | -90 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -543 |
| | | Upstream | -544 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -543 |
| | | Upstream | -544 |
Matrix_517 | ERF12 | Not available | Upstream | -544 |
| | | Upstream | -545 |
Matrix_74 | LFY | Not available | Upstream | -89 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -543 |
| | | Upstream | -544 |
Matrix_91 | CRF3 | Not available | Upstream | -543 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -92 |
| | | Upstream | -189 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -603 |
Motif_183 | TRANSINITDICOTS | Context sequence of translational initiation codon in dicots | Upstream | -513 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -33 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -545 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -533 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -534 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Upstream | -517 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -556 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Upstream | -32 |
| | | Upstream | -37 |
| | | Upstream | -89 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -523 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -33 |
| | | Upstream | -193 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -46 |
| | | Upstream | -880 |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | Upstream | -513 |
Motif_502 | MYB98 | The MYB98 subcircuit of the synergid gene regulatory network includes genes directly and indirectly regulated by MYB98 | Upstream | -889 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -659 |
| | | Upstream | -662 |
| | | Upstream | -665 |
| | | Upstream | -668 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Upstream | -1166 |
| | | Upstream | -1167 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -36 |
| | | Upstream | -88 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -511 |
| | | Upstream | -531 |
| | | Upstream | -731 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -32 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -511 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -752 |
Motif_70 | CANBNNAPA | Core of (CA)n element in storage protein genes in Brasica napus; embryo- and endosperm-specific transcription of napin (storage protein) gene, napA; seed specificity; activator and repressor | Downstream | 4382 |