Matrix_104 | PI | Not available | Upstream | -301 |
| | | Upstream | -302 |
Matrix_109 | GBF3 | Not available | Upstream | -325 |
| | | Upstream | -355 |
| | | Upstream | -356 |
Matrix_113 | ABI5 | Not available | Upstream | -301 |
| | | Upstream | -302 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -298 |
| | | Upstream | -299 |
| | | Upstream | -300 |
Matrix_120 | BEE2 | Not available | Upstream | -302 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -301 |
| | | Upstream | -302 |
| | | Upstream | -303 |
Matrix_128 | TGA2 | Not available | Upstream | -1804 |
Matrix_129 | ABF1 | Not available | Upstream | -302 |
| | | Upstream | -303 |
Matrix_130 | TCP16 | Not available | Upstream | -308 |
| | | Upstream | -340 |
Matrix_134 | ABF1 | Not available | Upstream | -303 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -303 |
| | | Upstream | -304 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -299 |
Matrix_156 | POC1 | Not available | Upstream | -303 |
| | | Upstream | -304 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -302 |
Matrix_166 | TGA4 | Not available | Upstream | -358 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -302 |
| | | Upstream | -303 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -299 |
| | | Upstream | -300 |
| | | Upstream | -354 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -299 |
| | | Upstream | -300 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -302 |
Matrix_214 | AP1 | Not available | Upstream | -300 |
| | | Upstream | -301 |
Matrix_216 | TCP16 | Not available | Upstream | -340 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -354 |
Matrix_24 | POC1 | Not available | Upstream | -299 |
| | | Upstream | -320 |
| | | Upstream | -331 |
Matrix_247 | PIF3 | Not available | Upstream | -302 |
| | | Upstream | -303 |
Matrix_251 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -334 |
Matrix_264 | ATAREB1 | Not available | Upstream | -299 |
| | | Upstream | -300 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -340 |
Matrix_278 | AtbZIP44 | Not available | Upstream | -356 |
Matrix_292 | FTQ4 | Not available | Upstream | -331 |
Matrix_294 | MEE35 | Not available | Upstream | -340 |
Matrix_296 | GBF2 | Not available | Upstream | -302 |
| | | Upstream | -303 |
| | | Upstream | -325 |
| | | Upstream | -356 |
| | | Upstream | -357 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -302 |
| | | Upstream | -303 |
| | | Upstream | -325 |
| | | Upstream | -356 |
| | | Upstream | -357 |
Matrix_301 | PIL5 | Not available | Upstream | -297 |
| | | Upstream | -298 |
Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -358 |
Matrix_311 | TGA1 | Not available | Upstream | -358 |
| | | Upstream | -1804 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -302 |
Matrix_331 | GBF1 | Not available | Upstream | -325 |
| | | Upstream | -355 |
| | | Upstream | -356 |
Matrix_332 | SPT;ALC | Not available | Upstream | -303 |
Matrix_338 | AP2 | Not available | Upstream | -299 |
| | | Upstream | -300 |
| | | Upstream | -332 |
Matrix_345 | POC1 | Not available | Upstream | -298 |
| | | Upstream | -299 |
| | | Upstream | -300 |
| | | Upstream | -321 |
Matrix_356 | PRR5 | Not available | Upstream | -300 |
Matrix_359 | FLC | Not available | Upstream | -300 |
Matrix_389 | ILR3 | Not available | Upstream | -302 |
Matrix_399 | TGA1 | Not available | Upstream | -358 |
Matrix_403 | BZR1 | Not available | Upstream | -300 |
| | | Upstream | -301 |
Matrix_42 | AT2G45680 | Not available | Upstream | -308 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -302 |
| | | Upstream | -303 |
| | | Upstream | -357 |
Matrix_443 | AGL15 | Not available | Upstream | -300 |
| | | Upstream | -301 |
Matrix_456 | bZIP60 | Not available | Upstream | -357 |
Matrix_457 | TGA2 | Not available | Upstream | -1805 |
Matrix_465 | MYC4 | Not available | Upstream | -302 |
Matrix_480 | BES1 | Not available | Upstream | -302 |
| | | Upstream | -303 |
Matrix_488 | ABF1 | Not available | Upstream | -302 |
| | | Upstream | -316 |
| | | Upstream | -384 |
Matrix_507 | TCP3 | Not available | Upstream | -307 |
| | | Upstream | -339 |
Matrix_53 | MYC3 | Not available | Upstream | -304 |
Matrix_55 | PIF3 | Not available | Upstream | -301 |
| | | Upstream | -302 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -358 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -303 |
Matrix_61 | ATCBF3 | Not available | Upstream | -329 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -304 |
Matrix_7 | PIF4 | Not available | Upstream | -302 |
| | | Upstream | -303 |
| | | Upstream | -304 |
| | | Upstream | -305 |
Matrix_77 | PRR5 | Not available | Upstream | -300 |
| | | Upstream | -301 |
Matrix_82 | TCP17 | Not available | Upstream | -340 |
Matrix_94 | TCP5 | Not available | Upstream | -340 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -304 |
Motif_189 | CMSRE1IBSPOA | CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene | Upstream | -603 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -304 |
Motif_197 | HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | Upstream | -302 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -303 |
| | | Upstream | -304 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -302 |
| | | Upstream | -356 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -303 |
Motif_275 | AtbZIP1 | The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | Upstream | -356 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -304 |
| | | Upstream | -358 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -300 |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | Upstream | -329 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -149 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -331 |
Motif_373 | TATABOX1 | TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -147 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -604 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -357 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -357 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -304 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -211 |
| | | Upstream | -359 |
| | | Upstream | -1805 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -331 |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | Upstream | -921 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -356 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -305 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -211 |
| | | Upstream | -359 |
| | | Upstream | -1805 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -331 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -308 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -302 |
| | | Upstream | -356 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -355 |
Motif_652 | AUXRETGA2GMGH3 | TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224 | Upstream | -356 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -302 |