View conserved binding sites


Gene
GM17G18080
Description
3-acetic acid-amido synthetase GH3
Alias
Glyma17g18080;Glyma17g18080.1;PAC:26314220;Glyma17g18080.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-301
Upstream-302
Matrix_109GBF3Not availableUpstream-325
Upstream-355
Upstream-356
Matrix_113ABI5Not availableUpstream-301
Upstream-302
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-298
Upstream-299
Upstream-300
Matrix_120BEE2Not availableUpstream-302
Matrix_122ABF1;AREB2Not availableUpstream-301
Upstream-302
Upstream-303
Matrix_128TGA2Not availableUpstream-1804
Matrix_129ABF1Not availableUpstream-302
Upstream-303
Matrix_130TCP16Not availableUpstream-308
Upstream-340
Matrix_134ABF1Not availableUpstream-303
Matrix_145GBF4;AT5G44080Not availableUpstream-303
Upstream-304
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-299
Matrix_156POC1Not availableUpstream-303
Upstream-304
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-302
Matrix_166TGA4Not availableUpstream-358
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-302
Upstream-303
Matrix_192FHY3/FAR1Not availableUpstream-299
Upstream-300
Upstream-354
Matrix_194HYH;HY5Not availableUpstream-299
Upstream-300
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-302
Matrix_214AP1Not availableUpstream-300
Upstream-301
Matrix_216TCP16Not availableUpstream-340
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-354
Matrix_24POC1Not availableUpstream-299
Upstream-320
Upstream-331
Matrix_247PIF3Not availableUpstream-302
Upstream-303
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-334
Matrix_264ATAREB1Not availableUpstream-299
Upstream-300
Matrix_266TCP16Determinants of the DNA binding specificity of class I and class II TCP transcription factorsUpstream-340
Matrix_278AtbZIP44Not availableUpstream-356
Matrix_292FTQ4Not availableUpstream-331
Matrix_294MEE35Not availableUpstream-340
Matrix_296GBF2Not availableUpstream-302
Upstream-303
Upstream-325
Upstream-356
Upstream-357
Matrix_300bZIP68;bZIP16Not availableUpstream-302
Upstream-303
Upstream-325
Upstream-356
Upstream-357
Matrix_301PIL5Not availableUpstream-297
Upstream-298
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-358
Matrix_311TGA1Not availableUpstream-358
Upstream-1804
Matrix_330MYC2;TT8Not availableUpstream-302
Matrix_331GBF1Not availableUpstream-325
Upstream-355
Upstream-356
Matrix_332SPT;ALCNot availableUpstream-303
Matrix_338AP2Not availableUpstream-299
Upstream-300
Upstream-332
Matrix_345POC1Not availableUpstream-298
Upstream-299
Upstream-300
Upstream-321
Matrix_356PRR5Not availableUpstream-300
Matrix_359FLCNot availableUpstream-300
Matrix_389ILR3Not availableUpstream-302
Matrix_399TGA1Not availableUpstream-358
Matrix_403BZR1Not availableUpstream-300
Upstream-301
Matrix_42AT2G45680Not availableUpstream-308
Matrix_438AtbZIP63Not availableUpstream-302
Upstream-303
Upstream-357
Matrix_443AGL15Not availableUpstream-300
Upstream-301
Matrix_456bZIP60Not availableUpstream-357
Matrix_457TGA2Not availableUpstream-1805
Matrix_465MYC4Not availableUpstream-302
Matrix_480BES1Not availableUpstream-302
Upstream-303
Matrix_488ABF1Not availableUpstream-302
Upstream-316
Upstream-384
Matrix_507TCP3Not availableUpstream-307
Upstream-339
Matrix_53MYC3Not availableUpstream-304
Matrix_55PIF3Not availableUpstream-301
Upstream-302
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-358
Matrix_60AT1G01260;AT5G57150Not availableUpstream-303
Matrix_61ATCBF3Not availableUpstream-329
Matrix_65POC1;PIL1Not availableUpstream-304
Matrix_7PIF4Not availableUpstream-302
Upstream-303
Upstream-304
Upstream-305
Matrix_77PRR5Not availableUpstream-300
Upstream-301
Matrix_82TCP17Not availableUpstream-340
Matrix_94TCP5Not availableUpstream-340
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-304
Motif_189CMSRE1IBSPOACMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A geneUpstream-603
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-304
Motif_197HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-302
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-303
Upstream-304
Motif_244ABRE-like binding site motifNot availableUpstream-302
Upstream-356
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-303
Motif_275AtbZIP1The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA bindingUpstream-356
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-304
Upstream-358
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-300
Motif_368CBF1 BS in cor15aDeterminants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifsUpstream-329
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-149
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-331
Motif_373TATABOX1TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-147
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-604
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-357
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-357
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-304
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-211
Upstream-359
Upstream-1805
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-331
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-921
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-356
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-305
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-211
Upstream-359
Upstream-1805
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-331
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-308
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-302
Upstream-356
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-355
Motif_652AUXRETGA2GMGH3TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224Upstream-356
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-302