Matrix_101 | ERF5 | Not available | Upstream | -1586 |
Matrix_191 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -805 |
Matrix_224 | ERF1 | Not available | Upstream | -1585 |
Matrix_234 | RAP2.3 | Not available | Upstream | -1586 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1586 |
Matrix_261 | ATERF-1 | Not available | Upstream | -1586 |
Matrix_272 | DEAR4 | Not available | Upstream | -1586 |
Matrix_287 | ERF2 | Not available | Upstream | -1586 |
Matrix_288 | RAP2.3 | Not available | Upstream | -1585 |
Matrix_290 | AP2 | Not available | Downstream | 1654 |
Matrix_295 | ERF1 | Not available | Upstream | -1586 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -1583 |
| | | Upstream | -1585 |
| | | Upstream | -1586 |
Matrix_334 | AT3G23230 | Not available | Upstream | -1587 |
Matrix_343 | AT2G33710 | Not available | Upstream | -1584 |
| | | Upstream | -1586 |
| | | Upstream | -1587 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -1585 |
Matrix_360 | ORA59 | Not available | Upstream | -1586 |
Matrix_361 | AT1G25550 | Not available | Upstream | -647 |
Matrix_362 | DEAR3 | Not available | Upstream | -1586 |
Matrix_363 | RAP2.3 | Not available | Upstream | -1585 |
Matrix_372 | ANAC81 | DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virus | Upstream | -762 |
| | | Upstream | -1145 |
| | | Upstream | -1146 |
| | | Upstream | -1489 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -1586 |
Matrix_378 | ATERF1 | Not available | Upstream | -1586 |
Matrix_409 | DEAR3 | Not available | Upstream | -1585 |
Matrix_423 | AT3G04030 | Not available | Upstream | -647 |
| | | Upstream | -648 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -1585 |
| | | Upstream | -1587 |
| | | Upstream | -1588 |
Matrix_45 | DRN | Not available | Upstream | -1586 |
Matrix_473 | RRTF1 | Not available | Upstream | -1586 |
Matrix_484 | ATERF13 | Not available | Upstream | -1586 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -1586 |
| | | Upstream | -1587 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -1585 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -1585 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -1583 |
| | | Upstream | -1585 |
| | | Upstream | -1586 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -1587 |
Matrix_91 | CRF3 | Not available | Upstream | -1586 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -1161 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -811 |
Motif_155 | NODCON1GM | One of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodules | Upstream | -805 |
Motif_22 | RYREPEATLEGUMINBOX | RY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybean | Upstream | -89 |
| | | Upstream | -738 |
| | | Upstream | -741 |
| | | Upstream | -976 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -826 |
| | | Upstream | -1178 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 1289 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -1587 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -1587 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Downstream | 1420 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -810 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Upstream | -1156 |
Motif_552 | MRE1 | MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1 | Upstream | -993 |
Motif_562 | -300CORE | TGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factors | Upstream | -1238 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -800 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -1156 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Upstream | -1206 |
Motif_640 | RYREPEATBNNAPA | RY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE | Upstream | -739 |
| | | Upstream | -741 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 1290 |
| | | Upstream | -1139 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Upstream | -1156 |