View conserved binding sites


Gene
GM17G12571
Description
finger Ran-binding domain-containing protein 2
Alias
Glyma17g12571;Glyma17g12571.2;PAC:26311671;Glyma17g12571.2
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1586
Matrix_191PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-805
Matrix_224ERF1Not availableUpstream-1585
Matrix_234RAP2.3Not availableUpstream-1586
Matrix_252RAP2.6Not availableUpstream-1586
Matrix_261ATERF-1Not availableUpstream-1586
Matrix_272DEAR4Not availableUpstream-1586
Matrix_287ERF2Not availableUpstream-1586
Matrix_288RAP2.3Not availableUpstream-1585
Matrix_290AP2Not availableDownstream1654
Matrix_295ERF1Not availableUpstream-1586
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-1583
Upstream-1585
Upstream-1586
Matrix_334AT3G23230Not availableUpstream-1587
Matrix_343AT2G33710Not availableUpstream-1584
Upstream-1586
Upstream-1587
Matrix_355ERF10;ERF11Not availableUpstream-1585
Matrix_360ORA59Not availableUpstream-1586
Matrix_361AT1G25550Not availableUpstream-647
Matrix_362DEAR3Not availableUpstream-1586
Matrix_363RAP2.3Not availableUpstream-1585
Matrix_372ANAC81DNA binding specificity of ATAF2, a NAC domain transcription factor targeted for degradation by Tobacco mosaic virusUpstream-762
Upstream-1145
Upstream-1146
Upstream-1489
Matrix_374AT5G07580;AT5G61590Not availableUpstream-1586
Matrix_378ATERF1Not availableUpstream-1586
Matrix_409DEAR3Not availableUpstream-1585
Matrix_423AT3G04030Not availableUpstream-647
Upstream-648
Matrix_426CRF1;CRF2Not availableUpstream-1585
Upstream-1587
Upstream-1588
Matrix_45DRNNot availableUpstream-1586
Matrix_473RRTF1Not availableUpstream-1586
Matrix_484ATERF13Not availableUpstream-1586
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1586
Upstream-1587
Matrix_50ATERF14;AT5G43410Not availableUpstream-1585
Matrix_506DRNL;ATERF-4Not availableUpstream-1585
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1583
Upstream-1585
Upstream-1586
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1587
Matrix_91CRF3Not availableUpstream-1586
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-1161
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-811
Motif_155NODCON1GMOne of two putative nodulin consensus sequences; See also NODCON2GM; One of the consensus sequence motifs of organ-specific elements (OSE) characteristic of the promoters activated in infected cells of root nodulesUpstream-805
Motif_22RYREPEATLEGUMINBOXRY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybeanUpstream-89
Upstream-738
Upstream-741
Upstream-976
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalUpstream-826
Upstream-1178
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream1289
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-1587
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-1587
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream1420
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-810
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-1156
Motif_552MRE1MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1Upstream-993
Motif_562-300CORETGTAAAG core motif in -300 elements of alpha-zein genes of maize; -300 element core; prolamin box; P-box; Binds with P-box binding factor (PBF); Binds with BPBF (Barley PBF); PBF is a DNA-binding protein of the DOF class of transcription factorsUpstream-1238
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-800
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-1156
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-1206
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-739
Upstream-741
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1290
Upstream-1139
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-1156