Matrix_101 | ERF5 | Not available | Upstream | -382 |
Matrix_113 | ABI5 | Not available | Upstream | -1027 |
Matrix_129 | ABF1 | Not available | Upstream | -1028 |
Matrix_134 | ABF1 | Not available | Upstream | -1028 |
Matrix_138 | RRTF1 | Not available | Upstream | -381 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -380 |
Matrix_151 | ASIL1 | Not available | Upstream | -358 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -381 |
Matrix_190 | ATERF1 | Not available | Upstream | -354 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -1031 |
Matrix_224 | ERF1 | Not available | Upstream | -381 |
Matrix_234 | RAP2.3 | Not available | Upstream | -382 |
Matrix_242 | AT2G25820;AT3G16280;AT4G32800;TINY2;tny | Not available | Upstream | -1136 |
Matrix_261 | ATERF-1 | Not available | Upstream | -381 |
Matrix_264 | ATAREB1 | Not available | Upstream | -1007 |
Matrix_285 | DDF1 | Not available | Upstream | -1138 |
Matrix_287 | ERF2 | Not available | Upstream | -382 |
Matrix_288 | RAP2.3 | Not available | Upstream | -381 |
Matrix_292 | FTQ4 | Not available | Upstream | -1137 |
Matrix_295 | ERF1 | Not available | Upstream | -380 |
Matrix_321 | HRD | Not available | Upstream | -381 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -381 |
Matrix_334 | AT3G23230 | Not available | Upstream | -381 |
Matrix_343 | AT2G33710 | Not available | Upstream | -382 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -380 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -381 |
Matrix_356 | PRR5 | Not available | Upstream | -1035 |
Matrix_360 | ORA59 | Not available | Upstream | -380 |
Matrix_363 | RAP2.3 | Not available | Upstream | -381 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -381 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -381 |
Matrix_378 | ATERF1 | Not available | Upstream | -382 |
Matrix_385 | DEAR4 | Not available | Upstream | -1137 |
Matrix_387 | ORA47 | Not available | Upstream | -1479 |
Matrix_403 | BZR1 | Not available | Upstream | -1030 |
Matrix_406 | ATERF-7 | Not available | Upstream | -380 |
Matrix_409 | DEAR3 | Not available | Upstream | -381 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -381 |
Matrix_45 | DRN | Not available | Upstream | -380 |
Matrix_462 | ATERF-8 | Not available | Upstream | -380 |
Matrix_473 | RRTF1 | Not available | Upstream | -382 |
Matrix_478 | AT1G01250 | Not available | Upstream | -1136 |
Matrix_480 | BES1 | Not available | Upstream | -1005 |
Matrix_484 | ATERF13 | Not available | Upstream | -380 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -381 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -380 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -381 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -381 |
Matrix_515 | ddf2;ATCBF3;CBF1;CBF4 | Not available | Upstream | -1138 |
Matrix_517 | ERF12 | Not available | Upstream | -380 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -381 |
Matrix_61 | ATCBF3 | Not available | Upstream | -1137 |
Matrix_73 | DEAR3;RAP2.9;RAP2.10 | Not available | Upstream | -1136 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -381 |
Matrix_91 | CRF3 | Not available | Upstream | -381 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Downstream | 2766 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -432 |
| | | Upstream | -430 |
| | | Upstream | -428 |
| | | Upstream | -426 |
| | | Upstream | -424 |
| | | Upstream | -422 |
| | | Upstream | -420 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Downstream | 2736 |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Downstream | 2729 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -435 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Downstream | 2741 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -379 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -1025 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Downstream | 2740 |
Motif_34 | LECPLEACS2 | Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene | Downstream | 2724 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -437 |
Motif_357 | NTBBF1ARROLB | NtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin induction | Downstream | 2719 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -1136 |
| | | Upstream | -141 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -1477 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -432 |
| | | Upstream | -430 |
| | | Upstream | -428 |
| | | Upstream | -426 |
| | | Upstream | -424 |
| | | Upstream | -422 |
| | | Upstream | -420 |
| | | Upstream | -418 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -1135 |
| | | Upstream | -140 |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | Downstream | 2728 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -1135 |
| | | Upstream | -140 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -432 |
| | | Upstream | -430 |
| | | Upstream | -428 |
| | | Upstream | -426 |
| | | Upstream | -424 |
| | | Upstream | -422 |
| | | Upstream | -420 |
| | | Upstream | -418 |
| | | Upstream | -416 |
| | | Upstream | -414 |
| | | Upstream | -412 |
Motif_83 | CIACADIANLELHC | Region necessary for circadian expression of tomato Lhc gene | Downstream | 2738 |