View conserved binding sites


Gene
GM17G08970
Description
No description available
Alias
Glyma17g08970;Glyma17g08970.1;PAC:26313808;Glyma17g08970.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-382
Matrix_113ABI5Not availableUpstream-1027
Matrix_129ABF1Not availableUpstream-1028
Matrix_134ABF1Not availableUpstream-1028
Matrix_138RRTF1Not availableUpstream-381
Matrix_147ERF3;AT1G80580Not availableUpstream-380
Matrix_151ASIL1Not availableUpstream-358
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-381
Matrix_190ATERF1Not availableUpstream-354
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-1031
Matrix_224ERF1Not availableUpstream-381
Matrix_234RAP2.3Not availableUpstream-382
Matrix_242AT2G25820;AT3G16280;AT4G32800;TINY2;tnyNot availableUpstream-1136
Matrix_261ATERF-1Not availableUpstream-381
Matrix_264ATAREB1Not availableUpstream-1007
Matrix_285DDF1Not availableUpstream-1138
Matrix_287ERF2Not availableUpstream-382
Matrix_288RAP2.3Not availableUpstream-381
Matrix_292FTQ4Not availableUpstream-1137
Matrix_295ERF1Not availableUpstream-380
Matrix_321HRDNot availableUpstream-381
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-381
Matrix_334AT3G23230Not availableUpstream-381
Matrix_343AT2G33710Not availableUpstream-382
Matrix_344ATERF15;AT4G18450Not availableUpstream-380
Matrix_355ERF10;ERF11Not availableUpstream-381
Matrix_356PRR5Not availableUpstream-1035
Matrix_360ORA59Not availableUpstream-380
Matrix_363RAP2.3Not availableUpstream-381
Matrix_374AT5G07580;AT5G61590Not availableUpstream-381
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-381
Matrix_378ATERF1Not availableUpstream-382
Matrix_385DEAR4Not availableUpstream-1137
Matrix_387ORA47Not availableUpstream-1479
Matrix_403BZR1Not availableUpstream-1030
Matrix_406ATERF-7Not availableUpstream-380
Matrix_409DEAR3Not availableUpstream-381
Matrix_426CRF1;CRF2Not availableUpstream-381
Matrix_45DRNNot availableUpstream-380
Matrix_462ATERF-8Not availableUpstream-380
Matrix_473RRTF1Not availableUpstream-382
Matrix_478AT1G01250Not availableUpstream-1136
Matrix_480BES1Not availableUpstream-1005
Matrix_484ATERF13Not availableUpstream-380
Matrix_493AT1G22985;AT1G71130Not availableUpstream-381
Matrix_5AT5G51190;ERF104Not availableUpstream-380
Matrix_50ATERF14;AT5G43410Not availableUpstream-381
Matrix_506DRNL;ATERF-4Not availableUpstream-381
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-1138
Matrix_517ERF12Not availableUpstream-380
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-381
Matrix_61ATCBF3Not availableUpstream-1137
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-1136
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-381
Matrix_91CRF3Not availableUpstream-381
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterDownstream2766
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-432
Upstream-430
Upstream-428
Upstream-426
Upstream-424
Upstream-422
Upstream-420
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFDownstream2736
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationDownstream2729
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-435
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream2741
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-379
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-1025
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisDownstream2740
Motif_34LECPLEACS2Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 geneDownstream2724
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-437
Motif_357NTBBF1ARROLBNtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin inductionDownstream2719
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-1136
Upstream-141
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-1477
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-432
Upstream-430
Upstream-428
Upstream-426
Upstream-424
Upstream-422
Upstream-420
Upstream-418
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-1135
Upstream-140
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Downstream2728
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-1135
Upstream-140
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-432
Upstream-430
Upstream-428
Upstream-426
Upstream-424
Upstream-422
Upstream-420
Upstream-418
Upstream-416
Upstream-414
Upstream-412
Motif_83CIACADIANLELHCRegion necessary for circadian expression of tomato Lhc geneDownstream2738