View conserved binding sites


Gene
GM16G28310
Description
Fructose-1,6-bisphosphatase class 1
Alias
Glyma16g28310;Glyma16g28310.1;PAC:26352385;Glyma16g28310.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-245
Matrix_106AT5G47390Not availableUpstream-292
Matrix_109GBF3Not availableUpstream-245
Upstream-246
Upstream-247
Matrix_113ABI5Not availableUpstream-245
Upstream-246
Upstream-247
Matrix_119RRTF1Not availableUpstream-286
Matrix_120BEE2Not availableUpstream-245
Upstream-246
Matrix_122ABF1;AREB2Not availableUpstream-245
Upstream-246
Matrix_129ABF1Not availableUpstream-245
Upstream-246
Matrix_134ABF1Not availableUpstream-246
Upstream-247
Matrix_138RRTF1Not availableUpstream-286
Matrix_145GBF4;AT5G44080Not availableUpstream-246
Upstream-247
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-242
Matrix_156POC1Not availableUpstream-246
Upstream-247
Matrix_192FHY3/FAR1Not availableUpstream-243
Upstream-246
Upstream-247
Matrix_194HYH;HY5Not availableUpstream-243
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-245
Upstream-246
Matrix_201AT1G74840Not availableUpstream-291
Matrix_206CUC1;ANAC100Not availableUpstream-249
Matrix_214AP1Not availableUpstream-244
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-246
Upstream-247
Matrix_24POC1Not availableUpstream-242
Matrix_247PIF3Not availableUpstream-245
Upstream-246
Matrix_257NAC050;ANAC051;anac057;NAC2Not availableUpstream-249
Matrix_264ATAREB1Not availableUpstream-243
Upstream-245
Upstream-246
Matrix_268EMB2749;VND5;SMB;VND1;ANAC076;NAC101;ANAC105Not availableUpstream-251
Matrix_271AT3G16350Not availableUpstream-292
Matrix_277RAP2.6Not availableUpstream-286
Matrix_296GBF2Not availableUpstream-245
Upstream-246
Upstream-247
Matrix_298RAV1Not availableUpstream-281
Matrix_300bZIP68;bZIP16Not availableUpstream-245
Upstream-246
Upstream-247
Matrix_301PIL5Not availableUpstream-241
Upstream-246
Upstream-247
Matrix_322NST3;ANAC015;BRN2Not availableUpstream-250
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-286
Matrix_331GBF1Not availableUpstream-245
Upstream-246
Upstream-247
Matrix_332SPT;ALCNot availableUpstream-246
Upstream-247
Matrix_336AT5G08520Not availableUpstream-293
Matrix_338AP2Not availableUpstream-243
Matrix_339bHLH104Not availableUpstream-245
Upstream-246
Matrix_343AT2G33710Not availableUpstream-287
Matrix_355ERF10;ERF11Not availableUpstream-286
Matrix_356PRR5Not availableUpstream-239
Upstream-243
Matrix_359FLCNot availableUpstream-244
Matrix_363RAP2.3Not availableUpstream-286
Matrix_389ILR3Not availableUpstream-245
Upstream-246
Matrix_403BZR1Not availableUpstream-244
Matrix_41anac058Not availableUpstream-249
Matrix_413RAV1Not availableUpstream-281
Matrix_420ANAC58Not availableUpstream-250
Matrix_426CRF1;CRF2Not availableUpstream-288
Matrix_44CUC3;anac046;NAC3;ANAC087;ATNAC6;CUC2Not availableUpstream-250
Matrix_443AGL15Not availableUpstream-244
Matrix_473RRTF1Not availableUpstream-287
Matrix_480BES1Not availableUpstream-245
Upstream-246
Matrix_488ABF1Not availableUpstream-238
Upstream-245
Upstream-250
Matrix_489RAV1Not availableUpstream-283
Matrix_493AT1G22985;AT1G71130Not availableUpstream-287
Matrix_506DRNL;ATERF-4Not availableUpstream-288
Matrix_53MYC3Not availableUpstream-247
Upstream-248
Matrix_55PIF3Not availableUpstream-245
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-286
Matrix_60AT1G01260;AT5G57150Not availableUpstream-246
Matrix_65POC1;PIL1Not availableUpstream-247
Matrix_7PIF4Not availableUpstream-245
Upstream-246
Upstream-247
Upstream-248
Matrix_77PRR5Not availableUpstream-244
Matrix_80BIM1Not availableUpstream-246
Upstream-247
Matrix_91CRF3Not availableUpstream-287
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-294
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-247
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-247
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-246
Motif_210REBETALGLHCB21REbeta found in Lemna gibba Lhcb21 gene promoter; Located at -114 to -109; A GATA sequence created at a position six nucleotides upstream could replace the function of REbeta; Required for phytochrome regulationUpstream-293
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-246
Upstream-247
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-231
Upstream-284
Motif_244ABRE-like binding site motifNot availableUpstream-245
Upstream-247
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-246
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-247
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-227
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-247
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-247
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-280
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-301
Motif_542ABI5;AtMYC2;HY5A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesisUpstream-245
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-248
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-245
Upstream-248
Motif_638ABRE binding site motifNot availableUpstream-247
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-302
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-245
Motif_92ABREATRD22ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22Upstream-246