View conserved binding sites


Gene
GM16G28170
Description
UPF0496 protein 4
Alias
Glyma16g28170;Glyma16g28170.1;PAC:26351460;Glyma16g28170.1
Binding siteNameDescriptionLocationPosition
Matrix_171LBD3;LBD4Not availableUpstream-1369
Upstream-1371
Matrix_260CAMTA3Not availableUpstream-536
Matrix_344ATERF15;AT4G18450Not availableUpstream-532
Matrix_475AT5G64220Not availableUpstream-532
Upstream-533
Motif_167SBP-box promoter motifMolecular characterisation of the Arabidopsis SBP-box genesDownstream1301
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-203
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-535
Upstream-1371
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-529
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-466
Motif_8PALBOXPPCBox P; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activationUpstream-542
Motif_86ACGTABOXA-box according to the nomenclature of ACGT elements; One of ACGT elements; Found in ocs gene; RITA-1 binding site; G motif; G motif and TATCCAY motif (a GATA motif as its antisense sequence) are responsible for sugar repressionDownstream1301