View conserved binding sites


Gene
GM16G26210
Description
base biosynthesis protein 2b
Alias
Glyma16g26210;Glyma16g26210.1;PAC:26352062;Glyma16g26210.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-67
Matrix_109GBF3Not availableUpstream-257
Matrix_110ATABI4;AT3G57600Not availableUpstream-65
Matrix_119RRTF1Not availableUpstream-66
Matrix_138RRTF1Not availableUpstream-69
Matrix_143GATA14;GATA6;GATA5Not availableUpstream-31
Matrix_171LBD3;LBD4Not availableUpstream-66
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-109
Matrix_190ATERF1Not availableUpstream-67
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-259
Matrix_224ERF1Not availableUpstream-261
Matrix_234RAP2.3Not availableUpstream-67
Matrix_261ATERF-1Not availableUpstream-66
Matrix_295ERF1Not availableUpstream-260
Matrix_296GBF2Not availableUpstream-256
Matrix_300bZIP68;bZIP16Not availableUpstream-256
Matrix_317AT1G06070;AT2G31370;AT2G40620Not availableUpstream-257
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-66
Matrix_34RAV1_2RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-258
Matrix_343AT2G33710Not availableUpstream-67
Matrix_355ERF10;ERF11Not availableUpstream-66
Matrix_360ORA59Not availableUpstream-260
Matrix_363RAP2.3Not availableUpstream-69
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-66
Matrix_406ATERF-7Not availableUpstream-260
Upstream-65
Matrix_409DEAR3Not availableUpstream-66
Matrix_426CRF1;CRF2Not availableUpstream-66
Matrix_45DRNNot availableUpstream-68
Matrix_462ATERF-8Not availableUpstream-260
Upstream-65
Matrix_467RAV1Not availableUpstream-258
Matrix_473RRTF1Not availableUpstream-67
Matrix_477RAV1Not availableUpstream-258
Matrix_484ATERF13Not availableUpstream-260
Matrix_493AT1G22985;AT1G71130Not availableUpstream-66
Matrix_50ATERF14;AT5G43410Not availableUpstream-261
Matrix_506DRNL;ATERF-4Not availableUpstream-66
Matrix_518AT2G21230Not availableUpstream-257
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-66
Matrix_84AtGRF6Not availableUpstream-258
Matrix_91CRF3Not availableUpstream-66
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-836
Motif_127SBOXATRBCSS-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5Upstream-108
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-254
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-259
Upstream-67
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-260
Motif_384SITEIOSPCNASite I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activationUpstream-255
Motif_457AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expressionUpstream-261
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-254
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-95