Matrix_101 | ERF5 | Not available | Upstream | -67 |
Matrix_109 | GBF3 | Not available | Upstream | -257 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -65 |
Matrix_119 | RRTF1 | Not available | Upstream | -66 |
Matrix_138 | RRTF1 | Not available | Upstream | -69 |
Matrix_143 | GATA14;GATA6;GATA5 | Not available | Upstream | -31 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -66 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -109 |
Matrix_190 | ATERF1 | Not available | Upstream | -67 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -259 |
Matrix_224 | ERF1 | Not available | Upstream | -261 |
Matrix_234 | RAP2.3 | Not available | Upstream | -67 |
Matrix_261 | ATERF-1 | Not available | Upstream | -66 |
Matrix_295 | ERF1 | Not available | Upstream | -260 |
Matrix_296 | GBF2 | Not available | Upstream | -256 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -256 |
Matrix_317 | AT1G06070;AT2G31370;AT2G40620 | Not available | Upstream | -257 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -66 |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -258 |
Matrix_343 | AT2G33710 | Not available | Upstream | -67 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -66 |
Matrix_360 | ORA59 | Not available | Upstream | -260 |
Matrix_363 | RAP2.3 | Not available | Upstream | -69 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -66 |
Matrix_406 | ATERF-7 | Not available | Upstream | -260 |
| | | Upstream | -65 |
Matrix_409 | DEAR3 | Not available | Upstream | -66 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -66 |
Matrix_45 | DRN | Not available | Upstream | -68 |
Matrix_462 | ATERF-8 | Not available | Upstream | -260 |
| | | Upstream | -65 |
Matrix_467 | RAV1 | Not available | Upstream | -258 |
Matrix_473 | RRTF1 | Not available | Upstream | -67 |
Matrix_477 | RAV1 | Not available | Upstream | -258 |
Matrix_484 | ATERF13 | Not available | Upstream | -260 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -66 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -261 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -66 |
Matrix_518 | AT2G21230 | Not available | Upstream | -257 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -66 |
Matrix_84 | AtGRF6 | Not available | Upstream | -258 |
Matrix_91 | CRF3 | Not available | Upstream | -66 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -836 |
Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | Upstream | -108 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -254 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -259 |
| | | Upstream | -67 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -260 |
Motif_384 | SITEIOSPCNA | Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation | Upstream | -255 |
Motif_457 | AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | Upstream | -261 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -254 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -95 |