View conserved binding sites


Gene
GM16G02400
Description
epiaristolochene 1,3-dihydroxylase
Alias
Glyma16g02400;Glyma16g02400.1;PAC:26353751;Glyma16g02400.1
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-466
Matrix_138RRTF1Not availableUpstream-466
Matrix_146ORA47Not availableUpstream-465
Matrix_147ERF3;AT1G80580Not availableUpstream-465
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-464
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-533
Matrix_186FHY3Not availableUpstream-534
Matrix_224ERF1Not availableUpstream-466
Matrix_243RAP2.12;RAP2.2Not availableUpstream-464
Matrix_261ATERF-1Not availableUpstream-465
Matrix_287ERF2Not availableUpstream-465
Matrix_288RAP2.3Not availableUpstream-466
Matrix_295ERF1Not availableUpstream-465
Matrix_321HRDNot availableUpstream-465
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-466
Matrix_334AT3G23230Not availableUpstream-464
Matrix_343AT2G33710Not availableUpstream-465
Matrix_355ERF10;ERF11Not availableUpstream-466
Matrix_360ORA59Not availableUpstream-465
Matrix_363RAP2.3Not availableUpstream-466
Matrix_374AT5G07580;AT5G61590Not availableUpstream-465
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-465
Matrix_385DEAR4Not availableUpstream-466
Matrix_406ATERF-7Not availableUpstream-467
Matrix_409DEAR3Not availableUpstream-466
Matrix_426CRF1;CRF2Not availableUpstream-464
Matrix_45DRNNot availableUpstream-465
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-466
Matrix_462ATERF-8Not availableUpstream-467
Matrix_476bHLH115;bHLH34Not availableUpstream-531
Matrix_484ATERF13Not availableUpstream-465
Matrix_493AT1G22985;AT1G71130Not availableUpstream-465
Matrix_50ATERF14;AT5G43410Not availableUpstream-466
Matrix_506DRNL;ATERF-4Not availableUpstream-464
Matrix_517ERF12Not availableUpstream-465
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-466
Matrix_77PRR5Not availableUpstream-534
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-464
Matrix_91CRF3Not availableUpstream-465
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-106
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-471
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-106
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-105
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-464
Motif_382CATATGGMSAURSequence found in NDE element in soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsivenessUpstream-471
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-107
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-728
Motif_419MYB4 binding site motifNot availableUpstream-106
Motif_426MYB58;MYB63MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in ArabidopsisUpstream-106
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-108
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-107