View conserved binding sites


Gene
GM16G01370
Description
No description available
Alias
Glyma16g01370;Glyma16g01370.1;PAC:26352862;Glyma16g01370.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-107
Matrix_104PINot availableUpstream-249
Upstream-250
Matrix_109GBF3Not availableUpstream-249
Upstream-250
Upstream-282
Upstream-283
Matrix_113ABI5Not availableUpstream-249
Upstream-250
Upstream-251
Upstream-252
Matrix_120BEE2Not availableUpstream-250
Upstream-251
Matrix_122ABF1;AREB2Not availableUpstream-249
Upstream-250
Matrix_128TGA2Not availableUpstream-280
Upstream-281
Upstream-638
Matrix_129ABF1Not availableUpstream-250
Upstream-251
Matrix_133DYT1Not availableUpstream-372
Matrix_134ABF1Not availableUpstream-251
Upstream-252
Matrix_145GBF4;AT5G44080Not availableUpstream-251
Upstream-252
Matrix_147ERF3;AT1G80580Not availableUpstream-9
Upstream-10
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-246
Upstream-247
Matrix_151ASIL1Not availableUpstream-106
Upstream-107
Upstream-417
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-105
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-9
Upstream-108
Upstream-109
Matrix_156POC1Not availableUpstream-251
Upstream-252
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-250
Upstream-251
Matrix_166TGA4Not availableUpstream-280
Upstream-281
Upstream-611
Matrix_17WRKY22Not availableUpstream-512
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-250
Matrix_192FHY3/FAR1Not availableUpstream-247
Upstream-248
Upstream-282
Upstream-283
Matrix_194HYH;HY5Not availableUpstream-247
Upstream-248
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-250
Upstream-251
Matrix_206CUC1;ANAC100Not availableUpstream-280
Matrix_214AP1Not availableUpstream-248
Upstream-249
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-247
Upstream-248
Upstream-251
Upstream-252
Upstream-282
Upstream-283
Matrix_224ERF1Not availableUpstream-9
Matrix_234RAP2.3Not availableUpstream-8
Matrix_235WRKY67;WRKY64;WRKY63;WRKY66Not availableUpstream-513
Matrix_24POC1Not availableUpstream-246
Upstream-247
Upstream-277
Upstream-278
Matrix_243RAP2.12;RAP2.2Not availableUpstream-106
Matrix_247PIF3Not availableUpstream-250
Upstream-251
Matrix_252RAP2.6Not availableUpstream-8
Matrix_253ETTNot availableUpstream-245
Matrix_261ATERF-1Not availableUpstream-107
Matrix_264ATAREB1Not availableUpstream-247
Upstream-248
Upstream-250
Upstream-251
Matrix_278AtbZIP44Not availableUpstream-280
Upstream-281
Matrix_287ERF2Not availableUpstream-107
Matrix_288RAP2.3Not availableUpstream-9
Matrix_295ERF1Not availableUpstream-9
Matrix_296GBF2Not availableUpstream-250
Upstream-251
Upstream-282
Upstream-283
Matrix_3WRKY48Not availableUpstream-512
Matrix_300bZIP68;bZIP16Not availableUpstream-250
Upstream-251
Upstream-282
Upstream-283
Matrix_301PIL5Not availableUpstream-245
Upstream-246
Upstream-276
Upstream-277
Matrix_306TGA1TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-278
Upstream-279
Matrix_311TGA1Not availableUpstream-280
Upstream-281
Upstream-638
Matrix_325WRKY4;WRKY3;WRKY58;ATWRKY34;WRKY20;ATWRKY2Not availableUpstream-513
Matrix_330MYC2;TT8Not availableUpstream-250
Upstream-251
Matrix_331GBF1Not availableUpstream-249
Upstream-250
Upstream-282
Upstream-283
Matrix_332SPT;ALCNot availableUpstream-251
Upstream-252
Matrix_338AP2Not availableUpstream-247
Upstream-248
Matrix_344ATERF15;AT4G18450Not availableUpstream-9
Upstream-10
Upstream-107
Upstream-108
Matrix_356PRR5Not availableUpstream-247
Upstream-248
Upstream-274
Upstream-275
Matrix_360ORA59Not availableUpstream-9
Upstream-10
Matrix_363RAP2.3Not availableUpstream-9
Matrix_371MYB7;AtMYB6;AtMYB32;ATMYB4Not availableUpstream-276
Matrix_374AT5G07580;AT5G61590Not availableUpstream-9
Upstream-106
Upstream-107
Upstream-108
Matrix_378ATERF1Not availableUpstream-8
Matrix_387ORA47Not availableUpstream-105
Matrix_389ILR3Not availableUpstream-250
Upstream-251
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-106
Matrix_396AP3Not availableUpstream-69
Matrix_399TGA1Not availableUpstream-279
Upstream-280
Matrix_401MYB55Not availableUpstream-275
Matrix_403BZR1Not availableUpstream-248
Upstream-249
Upstream-279
Upstream-280
Matrix_406ATERF-7Not availableUpstream-9
Upstream-10
Matrix_409DEAR3Not availableUpstream-9
Upstream-106
Upstream-107
Matrix_415WRKY27Not availableUpstream-239
Upstream-240
Matrix_433ATERF1Not availableUpstream-106
Upstream-107
Matrix_438AtbZIP63Not availableUpstream-279
Upstream-280
Matrix_443AGL15Not availableUpstream-248
Upstream-249
Matrix_448ATERF6Not availableUpstream-106
Upstream-107
Matrix_45DRNNot availableUpstream-9
Upstream-10
Matrix_456bZIP60Not availableUpstream-281
Matrix_457TGA2Not availableUpstream-610
Matrix_462ATERF-8Not availableUpstream-9
Upstream-10
Upstream-105
Upstream-106
Matrix_465MYC4Not availableUpstream-250
Upstream-251
Matrix_466PRR5Not availableUpstream-240
Upstream-241
Matrix_473RRTF1Not availableUpstream-8
Matrix_480BES1Not availableUpstream-249
Upstream-250
Upstream-251
Matrix_484ATERF13Not availableUpstream-9
Upstream-107
Matrix_488ABF1Not availableUpstream-249
Upstream-250
Upstream-280
Upstream-281
Matrix_5AT5G51190;ERF104Not availableUpstream-9
Upstream-10
Upstream-107
Upstream-108
Matrix_50ATERF14;AT5G43410Not availableUpstream-9
Matrix_517ERF12Not availableUpstream-9
Upstream-10
Matrix_53MYC3Not availableUpstream-252
Upstream-253
Matrix_55PIF3Not availableUpstream-249
Upstream-250
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-280
Matrix_59AT4G00238;AT4G00250Not availableUpstream-106
Matrix_60AT1G01260;AT5G57150Not availableUpstream-251
Upstream-252
Matrix_65POC1;PIL1Not availableUpstream-252
Matrix_7PIF4Not availableUpstream-250
Upstream-251
Upstream-252
Upstream-253
Matrix_75WRKY29Not availableUpstream-512
Matrix_77PRR5Not availableUpstream-248
Upstream-249
Matrix_80BIM1Not availableUpstream-249
Upstream-250
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-9
Motif_104CAREOSREP1CAREs (CAACTC regulatory elements) found in the promoter region of a cystein proteinase (REP-1) gene in riceUpstream-232
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-252
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-330
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-298
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-252
Upstream-330
Motif_197HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-250
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-251
Upstream-252
Upstream-897
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-330
Motif_244ABRE-like binding site motifNot availableUpstream-250
Upstream-283
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-251
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-331
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-10
Motif_329AMMORESIIUDCRNIA1Motifs (IIU and IID) found in the Chlamydomonas Nia1 gene promoter; Involved in ammonium-response; Located between -231 and -219 and also between -76 and -65; Involved in Nia1 transcription activationUpstream-271
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-330
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-252
Upstream-283
Upstream-635
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-245
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-70
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-144
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-282
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-282
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-252
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-104
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-282
Upstream-612
Upstream-639
Upstream-641
Motif_497ARE1ARE (antioxidant response element); antioxidant response element of rat glutathione S-transferase Ya subunit, and rat NAD(P)H:quinone reductase genesUpstream-280
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-312
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-331
Motif_525CRTDREHVCBF2Preferred sequence for AP2 transcriptional activator HvCBF2 of barley; Core CRT/DRE motif; HvCBF2 bound to a (G/a)(T/c)CGAC core motif; DNA binding is regulated by temperatureUpstream-247
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-284
Motif_573HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-281
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-282
Upstream-612
Upstream-639
Upstream-641
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-122
Upstream-247
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-145
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-250
Upstream-284
Motif_648ARE2ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1Upstream-281
Motif_652AUXRETGA2GMGH3TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224Upstream-282
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-435
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-26
Upstream-47
Upstream-49
Upstream-51
Upstream-53
Motif_72GADOWNATSequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABREUpstream-250
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-254
Upstream-285