View conserved binding sites


Gene
GM16G00541
Description
Ribosome biogenesis protein BOP1
Alias
Glyma16g00541;Glyma16g00541.1;PAC:26352930;Glyma16g00541.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-698
Matrix_119RRTF1Not availableUpstream-699
Matrix_138RRTF1Not availableUpstream-699
Matrix_146ORA47Not availableUpstream-698
Matrix_147ERF3;AT1G80580Not availableUpstream-700
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-699
Matrix_234RAP2.3Not availableUpstream-698
Matrix_252RAP2.6Not availableUpstream-698
Matrix_261ATERF-1Not availableUpstream-699
Matrix_272DEAR4Not availableUpstream-698
Matrix_287ERF2Not availableUpstream-698
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-699
Matrix_334AT3G23230Not availableUpstream-699
Matrix_343AT2G33710Not availableUpstream-698
Matrix_355ERF10;ERF11Not availableUpstream-699
Matrix_363RAP2.3Not availableUpstream-699
Matrix_396AP3Not availableUpstream-16
Matrix_406ATERF-7Not availableUpstream-700
Matrix_45DRNNot availableUpstream-700
Matrix_462ATERF-8Not availableUpstream-700
Matrix_493AT1G22985;AT1G71130Not availableUpstream-699
Matrix_50ATERF14;AT5G43410Not availableUpstream-699
Matrix_506DRNL;ATERF-4Not availableUpstream-699
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-699
Matrix_91CRF3Not availableUpstream-699
Motif_243TELOBOXATEEF1AA1telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristemsUpstream-16
Motif_358UP2ATMSDUp2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in ArabidopsisUpstream-17
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorUpstream-23
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-81
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-23
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementUpstream-23