View conserved binding sites


Gene
GM15G42540
Description
No description available
Alias
Glyma15g42540;Glyma15g42540.1;PAC:26332824;Glyma15g42540.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-220
Upstream-221
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-216
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-218
Upstream-219
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-221
Upstream-222
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-216
Matrix_261ATERF-1Not availableUpstream-220
Upstream-221
Matrix_287ERF2Not availableUpstream-220
Upstream-221
Matrix_321HRDNot availableUpstream-220
Upstream-221
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-219
Upstream-220
Matrix_334AT3G23230Not availableUpstream-221
Upstream-222
Matrix_343AT2G33710Not availableUpstream-220
Upstream-221
Matrix_355ERF10;ERF11Not availableUpstream-219
Upstream-220
Matrix_36RAV1_1RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsDownstream3355
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-220
Upstream-221
Matrix_385DEAR4Not availableUpstream-219
Matrix_387ORA47Not availableUpstream-218
Upstream-219
Matrix_394DREB_UNot availableUpstream-219
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableUpstream-219
Upstream-220
Matrix_409DEAR3Not availableUpstream-219
Upstream-220
Matrix_414AGL15Not availableUpstream-209
Matrix_415WRKY27Not availableUpstream-219
Matrix_426CRF1;CRF2Not availableUpstream-221
Upstream-222
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-219
Matrix_478AT1G01250Not availableUpstream-220
Matrix_48PINot availableUpstream-208
Matrix_493AT1G22985;AT1G71130Not availableUpstream-220
Upstream-221
Matrix_496ATMYB15Not availableUpstream-216
Matrix_50ATERF14;AT5G43410Not availableUpstream-219
Upstream-220
Matrix_506DRNL;ATERF-4Not availableUpstream-221
Upstream-222
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-216
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-218
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-219
Upstream-220
Matrix_59AT4G00238;AT4G00250Not availableUpstream-219
Matrix_61ATCBF3Not availableUpstream-219
Matrix_73DEAR3;RAP2.9;RAP2.10Not availableUpstream-220
Matrix_91CRF3Not availableUpstream-220
Upstream-221
Matrix_92AT1G33760Not availableUpstream-219
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-1767
Motif_195TATABOX4TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-1832
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-254
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightUpstream-1825
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-39
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-255
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-220
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-221
Motif_49TATAPVTRNALEUTATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP)Upstream-1831
Motif_536TBOXATGAPBTbox found in the Arabidopsis thaliana GAPB gene promoter; Located between -94 and -89 (T1) and also between -84 and -79 (T2); Mutations in the Tbox resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thalianaUpstream-245
Motif_549TBF1The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transitionUpstream-109
Upstream-1742
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-221
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-29
Upstream-31
Upstream-33
Upstream-203
Upstream-205
Upstream-207