View conserved binding sites


Gene
GM15G13211
Description
No description available
Alias
Glyma15g13211;Glyma15g13211.1;PAC:26329579;Glyma15g13211.1
Binding siteNameDescriptionLocationPosition
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorDownstream5598
Matrix_119RRTF1Not availableUpstream-52
Matrix_138RRTF1Not availableUpstream-52
Matrix_171LBD3;LBD4Not availableUpstream-52
Upstream-53
Matrix_231HDG2;HDG3;ATML1;HB-7Not availableDownstream5539
Matrix_243RAP2.12;RAP2.2Not availableUpstream-52
Matrix_247PIF3Not availableDownstream5595
Matrix_296GBF2Not availableDownstream5594
Matrix_300bZIP68;bZIP16Not availableDownstream5594
Matrix_308INONot availableUpstream-55
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-52
Upstream-53
Matrix_345POC1Not availableDownstream5598
Matrix_355ERF10;ERF11Not availableUpstream-52
Upstream-53
Matrix_363RAP2.3Not availableUpstream-52
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-52
Matrix_426CRF1;CRF2Not availableUpstream-52
Upstream-53
Matrix_493AT1G22985;AT1G71130Not availableUpstream-52
Upstream-53
Matrix_506DRNL;ATERF-4Not availableUpstream-52
Upstream-53
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-52
Upstream-53
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-52
Upstream-53
Matrix_91CRF3Not availableUpstream-52
Upstream-53
Motif_212GARE2OSREP1Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in riceDownstream5632
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesDownstream5655
Downstream5563
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream5603
Motif_346SND1;VND6;VND7;NST1;NST2Global analysis of direct targets of secondary wall NAC master switches in ArabidopsisDownstream5644
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationDownstream5656
Motif_419MYB4 binding site motifNot availableDownstream5563
Motif_459SORLIP1Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataDownstream5522
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceDownstream5583
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisDownstream5657
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream5493
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream5493
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcDownstream5591
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-91