Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Downstream | 5598 |
Matrix_119 | RRTF1 | Not available | Upstream | -52 |
Matrix_138 | RRTF1 | Not available | Upstream | -52 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_231 | HDG2;HDG3;ATML1;HB-7 | Not available | Downstream | 5539 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -52 |
Matrix_247 | PIF3 | Not available | Downstream | 5595 |
Matrix_296 | GBF2 | Not available | Downstream | 5594 |
Matrix_300 | bZIP68;bZIP16 | Not available | Downstream | 5594 |
Matrix_308 | INO | Not available | Upstream | -55 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_345 | POC1 | Not available | Downstream | 5598 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_363 | RAP2.3 | Not available | Upstream | -52 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -52 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Matrix_91 | CRF3 | Not available | Upstream | -52 |
| | | Upstream | -53 |
Motif_212 | GARE2OSREP1 | Gibberellin-responsive element (GARE) found in the promoter region of a cystein proteinase (REP-1) gene in rice | Downstream | 5632 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Downstream | 5655 |
| | | Downstream | 5563 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Downstream | 5603 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Downstream | 5644 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Downstream | 5656 |
Motif_419 | MYB4 binding site motif | Not available | Downstream | 5563 |
Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Downstream | 5522 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Downstream | 5583 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Downstream | 5657 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 5493 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 5493 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Downstream | 5591 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -91 |