Matrix_101 | ERF5 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
| | | Upstream | -229 |
| | | Upstream | -248 |
| | | Upstream | -249 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -229 |
Matrix_119 | RRTF1 | Not available | Upstream | -206 |
Matrix_138 | RRTF1 | Not available | Upstream | -206 |
Matrix_146 | ORA47 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -231 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_151 | ASIL1 | Not available | Upstream | -233 |
| | | Upstream | -249 |
| | | Upstream | -250 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -207 |
| | | Upstream | -208 |
| | | Upstream | -229 |
| | | Upstream | -249 |
| | | Upstream | -250 |
| | | Upstream | -251 |
| | | Upstream | -252 |
Matrix_187 | CDC5 | Not available | Upstream | -297 |
Matrix_190 | ATERF1 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -208 |
| | | Upstream | -228 |
| | | Upstream | -248 |
| | | Upstream | -249 |
Matrix_206 | CUC1;ANAC100 | Not available | Upstream | -259 |
Matrix_224 | ERF1 | Not available | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -209 |
| | | Upstream | -230 |
Matrix_229 | CDC5 | A cdc5+ homolog of a higher plant, Arabidopsis thaliana | Upstream | -297 |
Matrix_234 | RAP2.3 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
| | | Upstream | -229 |
| | | Upstream | -231 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -207 |
| | | Upstream | -208 |
Matrix_252 | RAP2.6 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
| | | Upstream | -229 |
| | | Upstream | -231 |
Matrix_261 | ATERF-1 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
Matrix_269 | FHY3/FAR1 | Not available | Upstream | -93 |
Matrix_272 | DEAR4 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -208 |
Matrix_287 | ERF2 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
| | | Upstream | -229 |
Matrix_288 | RAP2.3 | Not available | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -209 |
Matrix_295 | ERF1 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
Matrix_321 | HRD | Not available | Upstream | -206 |
| | | Upstream | -207 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -209 |
| | | Upstream | -230 |
Matrix_334 | AT3G23230 | Not available | Upstream | -207 |
| | | Upstream | -208 |
| | | Upstream | -210 |
| | | Upstream | -211 |
| | | Upstream | -230 |
| | | Upstream | -232 |
Matrix_343 | AT2G33710 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
| | | Upstream | -248 |
| | | Upstream | -249 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_349 | CDC5 | Not available | Upstream | -297 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -209 |
| | | Upstream | -249 |
| | | Upstream | -250 |
Matrix_360 | ORA59 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
Matrix_363 | RAP2.3 | Not available | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -209 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
| | | Upstream | -230 |
| | | Upstream | -231 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -206 |
| | | Upstream | -207 |
Matrix_378 | ATERF1 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
Matrix_381 | ATHB9 | Not available | Upstream | -250 |
Matrix_396 | AP3 | Not available | Upstream | -169 |
| | | Upstream | -170 |
Matrix_405 | DREB2C | Not available | Upstream | -207 |
| | | Upstream | -208 |
Matrix_406 | ATERF-7 | Not available | Upstream | -205 |
| | | Upstream | -207 |
| | | Upstream | -208 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_409 | DEAR3 | Not available | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -209 |
Matrix_41 | anac058 | Not available | Upstream | -259 |
Matrix_420 | ANAC58 | Not available | Upstream | -260 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -207 |
| | | Upstream | -208 |
| | | Upstream | -210 |
| | | Upstream | -211 |
| | | Upstream | -230 |
| | | Upstream | -232 |
Matrix_433 | ATERF1 | Not available | Upstream | -249 |
| | | Upstream | -250 |
Matrix_448 | ATERF6 | Not available | Upstream | -33 |
| | | Upstream | -206 |
| | | Upstream | -233 |
| | | Upstream | -249 |
| | | Upstream | -250 |
Matrix_45 | DRN | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
| | | Upstream | -231 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -206 |
Matrix_459 | ATHB9;CNA;PHB;ATHB-8;REV | Not available | Upstream | -250 |
Matrix_462 | ATERF-8 | Not available | Upstream | -205 |
| | | Upstream | -207 |
| | | Upstream | -208 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_473 | RRTF1 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
| | | Upstream | -229 |
| | | Upstream | -231 |
| | | Upstream | -232 |
Matrix_484 | ATERF13 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
| | | Upstream | -228 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -250 |
| | | Upstream | -251 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -209 |
| | | Upstream | -230 |
| | | Upstream | -249 |
| | | Upstream | -250 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -207 |
| | | Upstream | -208 |
| | | Upstream | -230 |
| | | Upstream | -232 |
Matrix_517 | ERF12 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -231 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -206 |
| | | Upstream | -208 |
| | | Upstream | -209 |
| | | Upstream | -230 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -207 |
| | | Upstream | -208 |
| | | Upstream | -210 |
| | | Upstream | -211 |
Matrix_91 | CRF3 | Not available | Upstream | -206 |
| | | Upstream | -207 |
| | | Upstream | -209 |
| | | Upstream | -210 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Downstream | 4554 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -255 |
Motif_153 | MARABOX1 | A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR) | Upstream | -767 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -167 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -207 |
| | | Upstream | -210 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -210 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -290 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -170 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -69 |
| | | Upstream | -1799 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -101 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -225 |
| | | Upstream | -1498 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -264 |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | Upstream | -1104 |
Motif_544 | CACGCAATGMGH3 | Sequence found in D4 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein | Upstream | -260 |
Motif_549 | TBF1 | The HSF-like transcription factor TBF1 is a major molecular switch for plant growth-to-defense transition | Upstream | -93 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -220 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 4653 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -330 |
| | | Upstream | -332 |