View conserved binding sites


Gene
GM14G11290
Description
Peroxisome biogenesis factor 10
Alias
Glyma14g11290;Glyma14g11290.1;PAC:26286702;Glyma14g11290.1
Binding siteNameDescriptionLocationPosition
Matrix_141AT3G25990Not availableUpstream-166
Upstream-162
Matrix_165KNAT1Not availableUpstream-178
Matrix_171LBD3;LBD4Not availableUpstream-173
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-179
Matrix_260CAMTA3Not availableUpstream-175
Matrix_301PIL5Not availableUpstream-180
Matrix_380ATMYR1Not availableUpstream-154
Matrix_416ASL5Not availableUpstream-153
Matrix_418KNAT6;KNAT2Not availableUpstream-179
Matrix_488ABF1Not availableUpstream-176
Matrix_78AT3G45610Not availableUpstream-146
Motif_168IBOXI box; I-box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; I box; Binding site of LeMYB1, that is a member of a novel class of myb-like proteins; LeMYBI act as a transcriptional activator; An evolutionarily conserved protein binding sequence upstream of a plant light-regulated geneUpstream-50
Motif_171TCP binding consensusfound enriched in peaks in chip-seq data for SEP3Upstream-162
Upstream-150
Motif_181IBOXCORENTI-box core motif in the CAMs (conserved DNA modular arrays) associated with light-responsive promoter regionsUpstream-50
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-144
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-173
Motif_221MYBCOREBinding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesisUpstream-144
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-177
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-51
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-172
Motif_332SV40COREENHANSV40 core enhancer; Similar sequences found in rbcS genesUpstream-194
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-144
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-185
Motif_462TE2F2NTPCNAte2f-2 found in the promoter of tobacco PCNA gene; Located between -84 and -77; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissueUpstream-185
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-213