Matrix_119 | RRTF1 | Not available | Upstream | -186 |
Matrix_127 | AtMYB15 | More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -166 |
Matrix_138 | RRTF1 | Not available | Upstream | -186 |
Matrix_151 | ASIL1 | Not available | Intron | 611 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Intron | 610 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -166 |
| | | Upstream | -167 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Intron | 1554 |
Matrix_186 | FHY3 | Not available | Intron | 1555 |
Matrix_209 | RAP2.6 | Not available | Upstream | -187 |
| | | Upstream | -188 |
Matrix_211 | MYB3 | Not available | Upstream | -169 |
Matrix_224 | ERF1 | Not available | Intron | 648 |
| | | Intron | 617 |
| | | Intron | 614 |
| | | Upstream | -186 |
Matrix_234 | RAP2.3 | Not available | Upstream | -185 |
Matrix_237 | MYB55 | Not available | Upstream | -168 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Intron | 648 |
| | | Intron | 615 |
| | | Intron | 611 |
Matrix_252 | RAP2.6 | Not available | Intron | 616 |
| | | Intron | 615 |
| | | Intron | 613 |
| | | Intron | 612 |
Matrix_261 | ATERF-1 | Not available | Upstream | -186 |
Matrix_277 | RAP2.6 | Not available | Intron | 648 |
| | | Upstream | -186 |
Matrix_287 | ERF2 | Not available | Intron | 649 |
| | | Intron | 616 |
| | | Intron | 612 |
| | | Upstream | -185 |
Matrix_288 | RAP2.3 | Not available | Upstream | -186 |
Matrix_295 | ERF1 | Not available | Intron | 647 |
| | | Intron | 616 |
| | | Upstream | -187 |
Matrix_315 | MYB111 | Not available | Upstream | -169 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Intron | 648 |
| | | Intron | 620 |
| | | Intron | 617 |
| | | Intron | 611 |
| | | Upstream | -186 |
Matrix_334 | AT3G23230 | Not available | Intron | 648 |
| | | Intron | 615 |
| | | Intron | 611 |
| | | Upstream | -186 |
Matrix_343 | AT2G33710 | Not available | Intron | 619 |
| | | Intron | 616 |
| | | Intron | 613 |
| | | Intron | 612 |
| | | Upstream | -185 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Intron | 616 |
| | | Intron | 610 |
Matrix_355 | ERF10;ERF11 | Not available | Intron | 620 |
| | | Intron | 617 |
| | | Intron | 611 |
| | | Upstream | -186 |
Matrix_360 | ORA59 | Not available | Intron | 616 |
| | | Upstream | -187 |
Matrix_363 | RAP2.3 | Not available | Upstream | -186 |
Matrix_371 | MYB7;AtMYB6;AtMYB32;ATMYB4 | Not available | Upstream | -170 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Intron | 616 |
| | | Intron | 611 |
| | | Intron | 610 |
| | | Upstream | -186 |
Matrix_378 | ATERF1 | Not available | Intron | 619 |
| | | Intron | 616 |
| | | Intron | 615 |
| | | Intron | 613 |
| | | Upstream | -185 |
Matrix_387 | ORA47 | Not available | Intron | 610 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Intron | 610 |
Matrix_406 | ATERF-7 | Not available | Intron | 618 |
| | | Intron | 610 |
| | | Upstream | -187 |
Matrix_409 | DEAR3 | Not available | Intron | 617 |
| | | Intron | 611 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -186 |
Matrix_433 | ATERF1 | Not available | Intron | 611 |
Matrix_455 | MYB111 | Not available | Upstream | -169 |
Matrix_462 | ATERF-8 | Not available | Intron | 618 |
| | | Intron | 610 |
Matrix_473 | RRTF1 | Not available | Upstream | -185 |
Matrix_48 | PI | Not available | Upstream | -154 |
Matrix_484 | ATERF13 | Not available | Intron | 616 |
| | | Upstream | -187 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Intron | 616 |
| | | Intron | 611 |
| | | Upstream | -186 |
Matrix_5 | AT5G51190;ERF104 | Not available | Intron | 610 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Intron | 648 |
| | | Intron | 617 |
| | | Intron | 611 |
| | | Upstream | -186 |
Matrix_506 | DRNL;ATERF-4 | Not available | Intron | 648 |
| | | Intron | 615 |
| | | Intron | 612 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -166 |
| | | Upstream | -167 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Intron | 620 |
| | | Intron | 617 |
| | | Intron | 614 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -186 |
Matrix_91 | CRF3 | Not available | Intron | 616 |
| | | Intron | 611 |
| | | Upstream | -186 |
Motif_106 | PR2GCNT | GC element conserved in the 5' upstream regions of group 2 PR protein genes (beta-1,3-glucanase (GLN2), chitinase (CHN17, CHN50)) of tobacco | Upstream | -183 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -145 |
| | | Upstream | -151 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -230 |
Motif_183 | TRANSINITDICOTS | Context sequence of translational initiation codon in dicots | Upstream | -191 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -170 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -203 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -170 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -197 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -170 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -188 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -187 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -229 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -220 |
| | | Upstream | -252 |
Motif_395 | RHE_element | Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns | Upstream | -230 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -170 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -231 |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | Upstream | -191 |
Motif_50 | AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | Upstream | -186 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -170 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Upstream | -249 |
Motif_632 | EREGCC | GCC box in ERE (ethylene responsive element); Ethylene-responsive region of tobacco (N.t.) chitinase gene contains two copies of the GCC-box; ERF2 and ERF4 enhanced the GCC box-mediated transcription; ERF3 reduced the transcription of the reporter gene in tobacco protoplasts; Binding site of AtEBP; Pti4/5/6 proteins from tomato which belong to the ERF family activate the expression of GCC box-containing PR genes; ERF3 was found to interact with NtUBC2, a ubiquitin-conjugating enzyme; Identification of an ethylene-responsive region in the promoter of a tobacco class I chitinase gene | Upstream | -183 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -134 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -170 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -134 |
Motif_691 | HBOXCONSENSUSPVCHS | H-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigen | Upstream | -161 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -146 |
| | | Upstream | -152 |