View conserved binding sites


Gene
GM13G36540
Description
WRKY transcription factor 69
Alias
Glyma13g36540;Glyma13g36540.1;PAC:26315068;Glyma13g36540.1
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-186
Matrix_127AtMYB15More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-166
Matrix_138RRTF1Not availableUpstream-186
Matrix_151ASIL1Not availableIntron611
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableIntron610
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-166
Upstream-167
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaIntron1554
Matrix_186FHY3Not availableIntron1555
Matrix_209RAP2.6Not availableUpstream-187
Upstream-188
Matrix_211MYB3Not availableUpstream-169
Matrix_224ERF1Not availableIntron648
Intron617
Intron614
Upstream-186
Matrix_234RAP2.3Not availableUpstream-185
Matrix_237MYB55Not availableUpstream-168
Matrix_243RAP2.12;RAP2.2Not availableIntron648
Intron615
Intron611
Matrix_252RAP2.6Not availableIntron616
Intron615
Intron613
Intron612
Matrix_261ATERF-1Not availableUpstream-186
Matrix_277RAP2.6Not availableIntron648
Upstream-186
Matrix_287ERF2Not availableIntron649
Intron616
Intron612
Upstream-185
Matrix_288RAP2.3Not availableUpstream-186
Matrix_295ERF1Not availableIntron647
Intron616
Upstream-187
Matrix_315MYB111Not availableUpstream-169
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableIntron648
Intron620
Intron617
Intron611
Upstream-186
Matrix_334AT3G23230Not availableIntron648
Intron615
Intron611
Upstream-186
Matrix_343AT2G33710Not availableIntron619
Intron616
Intron613
Intron612
Upstream-185
Matrix_344ATERF15;AT4G18450Not availableIntron616
Intron610
Matrix_355ERF10;ERF11Not availableIntron620
Intron617
Intron611
Upstream-186
Matrix_360ORA59Not availableIntron616
Upstream-187
Matrix_363RAP2.3Not availableUpstream-186
Matrix_371MYB7;AtMYB6;AtMYB32;ATMYB4Not availableUpstream-170
Matrix_374AT5G07580;AT5G61590Not availableIntron616
Intron611
Intron610
Upstream-186
Matrix_378ATERF1Not availableIntron619
Intron616
Intron615
Intron613
Upstream-185
Matrix_387ORA47Not availableIntron610
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableIntron610
Matrix_406ATERF-7Not availableIntron618
Intron610
Upstream-187
Matrix_409DEAR3Not availableIntron617
Intron611
Matrix_426CRF1;CRF2Not availableUpstream-186
Matrix_433ATERF1Not availableIntron611
Matrix_455MYB111Not availableUpstream-169
Matrix_462ATERF-8Not availableIntron618
Intron610
Matrix_473RRTF1Not availableUpstream-185
Matrix_48PINot availableUpstream-154
Matrix_484ATERF13Not availableIntron616
Upstream-187
Matrix_493AT1G22985;AT1G71130Not availableIntron616
Intron611
Upstream-186
Matrix_5AT5G51190;ERF104Not availableIntron610
Matrix_50ATERF14;AT5G43410Not availableIntron648
Intron617
Intron611
Upstream-186
Matrix_506DRNL;ATERF-4Not availableIntron648
Intron615
Intron612
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-166
Upstream-167
Matrix_57WIN1;SHN3;SHN2Not availableIntron620
Intron617
Intron614
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-186
Matrix_91CRF3Not availableIntron616
Intron611
Upstream-186
Motif_106PR2GCNTGC element conserved in the 5' upstream regions of group 2 PR protein genes (beta-1,3-glucanase (GLN2), chitinase (CHN17, CHN50)) of tobaccoUpstream-183
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-145
Upstream-151
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-230
Motif_183TRANSINITDICOTSContext sequence of translational initiation codon in dicotsUpstream-191
Motif_192BOXLCOREDCPALConsensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitroUpstream-170
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-203
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-170
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-197
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-170
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-188
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-187
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-229
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-220
Upstream-252
Motif_395RHE_elementFunctional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution PatternsUpstream-230
Motif_419MYB4 binding site motifNot availableUpstream-170
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-231
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-191
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-186
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-170
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-249
Motif_632EREGCCGCC box in ERE (ethylene responsive element); Ethylene-responsive region of tobacco (N.t.) chitinase gene contains two copies of the GCC-box; ERF2 and ERF4 enhanced the GCC box-mediated transcription; ERF3 reduced the transcription of the reporter gene in tobacco protoplasts; Binding site of AtEBP; Pti4/5/6 proteins from tomato which belong to the ERF family activate the expression of GCC box-containing PR genes; ERF3 was found to interact with NtUBC2, a ubiquitin-conjugating enzyme; Identification of an ethylene-responsive region in the promoter of a tobacco class I chitinase geneUpstream-183
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-134
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-170
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-134
Motif_691HBOXCONSENSUSPVCHSH-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigenUpstream-161
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-146
Upstream-152