| Matrix_101 | ERF5 | Not available | Upstream | -1137 |
| Matrix_104 | PI | Not available | Upstream | -1010 |
| | | Upstream | -1233 |
| | | Upstream | -1484 |
| Matrix_119 | RRTF1 | Not available | Upstream | -1138 |
| | | Upstream | -1169 |
| | | Upstream | -1172 |
| Matrix_130 | TCP16 | Not available | Downstream | 1318 |
| Matrix_138 | RRTF1 | Not available | Upstream | -1138 |
| | | Upstream | -1172 |
| Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -1139 |
| | | Upstream | -1266 |
| Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -1138 |
| Matrix_171 | LBD3;LBD4 | Not available | Upstream | -1133 |
| | | Upstream | -1138 |
| | | Upstream | -1222 |
| Matrix_190 | ATERF1 | Not available | Upstream | -1136 |
| | | Upstream | -1137 |
| | | Upstream | -1174 |
| Matrix_216 | TCP16 | Not available | Downstream | 1318 |
| Matrix_224 | ERF1 | Not available | Upstream | -1138 |
| | | Upstream | -1265 |
| Matrix_234 | RAP2.3 | Not available | Upstream | -1136 |
| | | Upstream | -1137 |
| | | Upstream | -1173 |
| | | Upstream | -1266 |
| Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -1133 |
| | | Upstream | -1138 |
| Matrix_247 | PIF3 | Not available | Upstream | -1011 |
| | | Upstream | -1210 |
| Matrix_261 | ATERF-1 | Not available | Upstream | -1133 |
| | | Upstream | -1138 |
| | | Upstream | -1266 |
| | | Upstream | -1454 |
| Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Downstream | 1318 |
| Matrix_272 | DEAR4 | Not available | Upstream | -1132 |
| | | Upstream | -1137 |
| | | Upstream | -1173 |
| | | Upstream | -1266 |
| Matrix_281 | TCP13 | Not available | Upstream | -1178 |
| Matrix_288 | RAP2.3 | Not available | Upstream | -1138 |
| | | Upstream | -1172 |
| | | Upstream | -1265 |
| Matrix_294 | MEE35 | Not available | Downstream | 1316 |
| Matrix_295 | ERF1 | Not available | Upstream | -1139 |
| | | Upstream | -1266 |
| Matrix_321 | HRD | Not available | Upstream | -1138 |
| Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -1133 |
| | | Upstream | -1138 |
| | | Upstream | -1265 |
| Matrix_334 | AT3G23230 | Not available | Upstream | -1138 |
| | | Upstream | -1267 |
| Matrix_344 | ATERF15;AT4G18450 | Not available | Downstream | 1107 |
| Matrix_355 | ERF10;ERF11 | Not available | Upstream | -1133 |
| | | Upstream | -1138 |
| | | Upstream | -1265 |
| Matrix_360 | ORA59 | Not available | Upstream | -1139 |
| | | Upstream | -1266 |
| Matrix_363 | RAP2.3 | Not available | Upstream | -1138 |
| | | Upstream | -1172 |
| | | Upstream | -1265 |
| Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -1138 |
| | | Upstream | -1139 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -1139 |
| | | Upstream | -1264 |
| Matrix_426 | CRF1;CRF2 | Not available | Upstream | -1133 |
| | | Upstream | -1138 |
| | | Upstream | -1267 |
| Matrix_443 | AGL15 | Not available | Upstream | -1009 |
| | | Upstream | -1232 |
| | | Upstream | -1483 |
| Matrix_448 | ATERF6 | Not available | Downstream | 1108 |
| Matrix_45 | DRN | Not available | Upstream | -1139 |
| | | Upstream | -1266 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -1139 |
| | | Upstream | -1264 |
| Matrix_480 | BES1 | Not available | Upstream | -187 |
| Matrix_484 | ATERF13 | Not available | Upstream | -1139 |
| | | Upstream | -1266 |
| Matrix_49 | FHY3/FAR1 | Not available | Upstream | -67 |
| | | Upstream | -986 |
| Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -1133 |
| | | Upstream | -1138 |
| | | Upstream | -1266 |
| Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -1138 |
| | | Upstream | -1267 |
| Matrix_517 | ERF12 | Not available | Upstream | -1139 |
| | | Upstream | -1266 |
| Matrix_77 | PRR5 | Not available | Upstream | -69 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -1133 |
| | | Upstream | -1138 |
| | | Upstream | -1267 |
| Matrix_91 | CRF3 | Not available | Upstream | -1133 |
| | | Upstream | -1138 |
| | | Upstream | -1266 |
| Motif_244 | ABRE-like binding site motif | Not available | Upstream | -758 |
| | | Upstream | -1233 |
| | | Upstream | -1235 |
| | | Upstream | -1484 |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -1139 |
| | | Upstream | -1266 |
| Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -760 |
| | | Upstream | -1012 |
| | | Upstream | -1105 |
| | | Upstream | -1235 |
| | | Upstream | -1486 |
| Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -758 |
| | | Upstream | -1209 |
| | | Upstream | -1233 |
| | | Upstream | -1484 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -139 |
| | | Upstream | -141 |
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