Matrix_101 | ERF5 | Not available | Upstream | -134 |
Matrix_104 | PI | Not available | Upstream | -415 |
Matrix_109 | GBF3 | Not available | Upstream | -415 |
| | | Upstream | -413 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -146 |
| | | Upstream | -134 |
Matrix_113 | ABI5 | Not available | Upstream | -415 |
| | | Upstream | -413 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -536 |
| | | Upstream | -417 |
| | | Upstream | -133 |
Matrix_119 | RRTF1 | Not available | Upstream | -135 |
Matrix_120 | BEE2 | Not available | Upstream | -414 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -415 |
| | | Upstream | -131 |
Matrix_129 | ABF1 | Not available | Upstream | -414 |
Matrix_130 | TCP16 | Not available | Upstream | -527 |
Matrix_134 | ABF1 | Not available | Upstream | -413 |
Matrix_138 | RRTF1 | Not available | Upstream | -135 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -130 |
Matrix_143 | GATA14;GATA6;GATA5 | Not available | Upstream | -378 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Upstream | -527 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -413 |
Matrix_146 | ORA47 | Not available | Upstream | -134 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -134 |
Matrix_151 | ASIL1 | Not available | Upstream | -138 |
| | | Upstream | -135 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -133 |
| | | Upstream | -41 |
Matrix_156 | POC1 | Not available | Upstream | -413 |
Matrix_16 | AT3G04450;PHL1 | Not available | Upstream | -37 |
Matrix_162 | AtPHR1 | Not available | Upstream | -37 |
Matrix_166 | TGA4 | Not available | Upstream | -540 |
Matrix_169 | E2F1 | Not available | Upstream | -133 |
Matrix_181 | Dof5.7 | Not available | Upstream | -236 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -131 |
| | | Upstream | -112 |
Matrix_186 | FHY3 | Not available | Upstream | -132 |
| | | Upstream | -113 |
Matrix_19 | PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling | Upstream | -279 |
Matrix_190 | ATERF1 | Not available | Upstream | -134 |
| | | Upstream | -133 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -417 |
| | | Upstream | -413 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -417 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -529 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -414 |
Matrix_214 | AP1 | Not available | Upstream | -416 |
Matrix_216 | TCP16 | Not available | Upstream | -527 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -417 |
| | | Upstream | -413 |
Matrix_224 | ERF1 | Not available | Upstream | -135 |
Matrix_232 | TCP23 | Not available | Upstream | -528 |
Matrix_234 | RAP2.3 | Not available | Upstream | -134 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -133 |
Matrix_246 | ARR10 | Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators | Upstream | -269 |
Matrix_247 | PIF3 | Not available | Upstream | -414 |
Matrix_25 | AP3 | Not available | Upstream | -162 |
Matrix_250 | ADAP;AT1G79700;WRI1;ANT | Not available | Upstream | -295 |
Matrix_252 | RAP2.6 | Not available | Upstream | -134 |
Matrix_256 | IXR11;KNAT5;KNAT4;KNAT3 | Not available | Upstream | -356 |
Matrix_260 | CAMTA3 | Not available | Upstream | -129 |
Matrix_261 | ATERF-1 | Not available | Upstream | -134 |
| | | Upstream | -42 |
Matrix_264 | ATAREB1 | Not available | Upstream | -417 |
| | | Upstream | -414 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Upstream | -527 |
Matrix_272 | DEAR4 | Not available | Upstream | -134 |
Matrix_278 | AtbZIP44 | Not available | Upstream | -542 |
Matrix_279 | HRS1 | Not available | Upstream | -36 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -527 |
Matrix_281 | TCP13 | Not available | Upstream | -527 |
Matrix_287 | ERF2 | Not available | Upstream | -134 |
Matrix_288 | RAP2.3 | Not available | Upstream | -135 |
Matrix_294 | MEE35 | Not available | Upstream | -527 |
Matrix_295 | ERF1 | Not available | Upstream | -134 |
Matrix_296 | GBF2 | Not available | Upstream | -414 |
| | | Upstream | -413 |
Matrix_297 | TCP15 | Not available | Upstream | -528 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -414 |
| | | Upstream | -413 |
Matrix_301 | PIL5 | Not available | Upstream | -419 |
Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -540 |
Matrix_321 | HRD | Not available | Upstream | -134 |
Matrix_324 | AT2G01060 | Not available | Upstream | -37 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -135 |
| | | Upstream | -43 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -130 |
Matrix_331 | GBF1 | Not available | Upstream | -415 |
| | | Upstream | -413 |
Matrix_332 | SPT;ALC | Not available | Upstream | -413 |
| | | Upstream | -276 |
| | | Upstream | -129 |
Matrix_334 | AT3G23230 | Not available | Upstream | -133 |
| | | Upstream | -41 |
Matrix_335 | HSFB2A | Not available | Upstream | -288 |
Matrix_338 | AP2 | Not available | Upstream | -417 |
Matrix_339 | bHLH104 | Not available | Upstream | -414 |
Matrix_343 | AT2G33710 | Not available | Upstream | -137 |
| | | Upstream | -134 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -134 |
Matrix_345 | POC1 | Not available | Upstream | -536 |
| | | Upstream | -535 |
| | | Upstream | -133 |
Matrix_348 | AT5G51910 | Not available | Upstream | -527 |
| | | Upstream | -526 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -135 |
| | | Upstream | -43 |
Matrix_356 | PRR5 | Not available | Upstream | -421 |
| | | Upstream | -417 |
Matrix_360 | ORA59 | Not available | Upstream | -134 |
Matrix_361 | AT1G25550 | Not available | Upstream | -37 |
Matrix_363 | RAP2.3 | Not available | Upstream | -135 |
Matrix_369 | AT2G18300 | Not available | Upstream | -132 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -135 |
| | | Upstream | -134 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -134 |
Matrix_378 | ATERF1 | Not available | Upstream | -134 |
Matrix_380 | ATMYR1 | Not available | Upstream | -38 |
Matrix_389 | ILR3 | Not available | Upstream | -414 |
| | | Upstream | -130 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Upstream | -135 |
Matrix_396 | AP3 | Not available | Upstream | -508 |
Matrix_399 | TGA1 | Not available | Upstream | -540 |
Matrix_40 | TCP2 | Not available | Upstream | -527 |
Matrix_403 | BZR1 | Not available | Upstream | -534 |
| | | Upstream | -416 |
Matrix_406 | ATERF-7 | Not available | Upstream | -136 |
Matrix_409 | DEAR3 | Not available | Upstream | -135 |
Matrix_42 | AT2G45680 | Not available | Upstream | -527 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -133 |
| | | Upstream | -41 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -541 |
Matrix_443 | AGL15 | Not available | Upstream | -416 |
Matrix_448 | ATERF6 | Not available | Upstream | -138 |
| | | Upstream | -135 |
Matrix_45 | DRN | Not available | Upstream | -134 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -135 |
Matrix_456 | bZIP60 | Not available | Upstream | -541 |
Matrix_457 | TGA2 | Not available | Upstream | -539 |
Matrix_462 | ATERF-8 | Not available | Upstream | -136 |
Matrix_466 | PRR5 | Not available | Upstream | -417 |
Matrix_473 | RRTF1 | Not available | Upstream | -134 |
Matrix_475 | AT5G64220 | Not available | Upstream | -132 |
Matrix_476 | bHLH115;bHLH34 | Not available | Upstream | -129 |
Matrix_480 | BES1 | Not available | Upstream | -414 |
| | | Upstream | -130 |
Matrix_484 | ATERF13 | Not available | Upstream | -134 |
Matrix_488 | ABF1 | Not available | Upstream | -549 |
| | | Upstream | -415 |
| | | Upstream | -386 |
| | | Upstream | -138 |
Matrix_49 | FHY3/FAR1 | Not available | Upstream | -134 |
Matrix_491 | AT1G68670;AT3G25790 | Not available | Upstream | -37 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -134 |
Matrix_497 | AP3 | Not available | Upstream | -119 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -134 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -135 |
| | | Upstream | -43 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -133 |
| | | Upstream | -41 |
Matrix_507 | TCP3 | Not available | Upstream | -528 |
Matrix_508 | APL;AT3G12730;AT3G24120;UNE16 | Not available | Upstream | -37 |
Matrix_517 | ERF12 | Not available | Upstream | -134 |
Matrix_53 | MYC3 | Not available | Upstream | -132 |
Matrix_55 | PIF3 | Not available | Upstream | -415 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -540 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -138 |
| | | Upstream | -135 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -413 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -412 |
Matrix_69 | AT2G03500 | Not available | Upstream | -37 |
Matrix_7 | PIF4 | Not available | Upstream | -414 |
| | | Upstream | -412 |
Matrix_77 | PRR5 | Not available | Upstream | -416 |
| | | Upstream | -415 |
| | | Upstream | -132 |
| | | Upstream | -113 |
Matrix_80 | BIM1 | Not available | Upstream | -415 |
Matrix_82 | TCP17 | Not available | Upstream | -527 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -133 |
| | | Upstream | -41 |
Matrix_91 | CRF3 | Not available | Upstream | -134 |
Matrix_94 | TCP5 | Not available | Upstream | -527 |
Matrix_97 | APRR2 | Not available | Upstream | -37 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -475 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -400 |
Motif_141 | BP5OSWX | OsBP-5 (a MYC protein) binding site in Wx promoter | Upstream | -531 |
Motif_150 | RBCSCONSENSUS | rbcS general consensus sequence; AATCCAA or AATCCAAC | Upstream | -460 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Upstream | -156 |
Motif_163 | BOXCPSAS1 | Box C in pea (P.s.) asparagine synthetase (AS1) gene; Found at -45; AS1 is negatively regulated by light; Box C binds with nuclear proteins, which was competed by a putative repressor element RE1 | Upstream | -125 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -412 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -303 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -520 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -412 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -413 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -530 |
| | | Upstream | -413 |
| | | Upstream | -412 |
| | | Upstream | -129 |
| | | Upstream | -110 |
Motif_221 | MYBCORE | Binding site for all animal MYB and at least two plant MYB proteins ATMYB1 and ATMYB2, both isolated from Arabidopsis; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis; A petunia MYB protein (MYB.Ph3) is involved in regulation of flavonoid biosynthesis | Upstream | -303 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -359 |
Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -507 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -541 |
| | | Upstream | -414 |
| | | Upstream | -412 |
Motif_248 | L1-box | Arabidopsis DELLA and two HD-ZIP transcription factors regulate GA signaling in the epidermis through the L1 box cis-element | Upstream | -501 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -413 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -412 |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | Upstream | -175 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -421 |
Motif_310 | ANAERO3CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO3CONSENSUS by the PLACEdb curator | Upstream | -392 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -133 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -588 |
| | | Upstream | -129 |
| | | Upstream | -110 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -303 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -539 |
| | | Upstream | -412 |
Motif_346 | SND1;VND6;VND7;NST1;NST2 | Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis | Upstream | -231 |
Motif_347 | OPAQUE2ZMB32 | opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC) | Upstream | -540 |
Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -507 |
| | | Upstream | -194 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -329 |
Motif_383 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -262 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -540 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -540 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -412 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -114 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -538 |
Motif_48 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -571 |
Motif_542 | ABI5;AtMYC2;HY5 | A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth. Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -414 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -411 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -530 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -529 |
Motif_570 | POLASIG2 | PolyA signal; poly A signal found in rice alpha-amylase; -10 to -30 in the case of animal genes | Upstream | -175 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -538 |
Motif_580 | L1BOXATPDF1 | L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain protein | Upstream | -501 |
Motif_584 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -262 |
Motif_602 | E2Fc;E2Fd | The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants | Upstream | -114 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -526 |
Motif_606 | NAPINMOTIFBN | Sequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seeds | Upstream | -492 |
| | | Downstream | 2206 |
Motif_618 | MYB1AT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis | Upstream | -165 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -414 |
| | | Upstream | -411 |
Motif_630 | WBOXNTCHN48 | W box identified in the region between -125 and -69 of a tobacco class I basic chitinase gene CHN48; NtWRKY1, NtWRKY2 and NtWRKY4 bound to W box; NtWRKYs possibly involved in elicitor-respsonsive transcription of defense genes in tobacco | Upstream | -366 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -412 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -411 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -171 |
| | | Upstream | -155 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -155 |
Motif_689 | ANAC092 | NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis | Upstream | -61 |
Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -414 |
Motif_92 | ABREATRD22 | ABRE (ABA responsive element) in Arabidopsis dehydration-responsive gene rd22 | Upstream | -413 |
Motif_95 | UPRE2AT | XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR | Upstream | -540 |