Matrix_113 | ABI5 | Not available | Downstream | 1355 |
| | | Downstream | 1357 |
Matrix_129 | ABF1 | Not available | Downstream | 1356 |
Matrix_130 | TCP16 | Not available | Downstream | 1181 |
Matrix_144 | AT5G08330;AT5G23280 | Not available | Downstream | 1181 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Downstream | 576 |
Matrix_192 | FHY3/FAR1 | Not available | Downstream | 1353 |
Matrix_196 | TCP20;AT5G41030 | Not available | Downstream | 1179 |
Matrix_216 | TCP16 | Not available | Downstream | 1181 |
Matrix_232 | TCP23 | Not available | Downstream | 1182 |
Matrix_25 | AP3 | Not available | Upstream | -105 |
Matrix_257 | NAC050;ANAC051;anac057;NAC2 | Not available | Upstream | -312 |
Matrix_264 | ATAREB1 | Not available | Downstream | 1353 |
| | | Downstream | 1356 |
Matrix_266 | TCP16 | Determinants of the DNA binding specificity of class I and class II TCP transcription factors | Downstream | 1181 |
Matrix_294 | MEE35 | Not available | Downstream | 1181 |
Matrix_297 | TCP15 | Not available | Downstream | 1180 |
Matrix_301 | PIL5 | Not available | Downstream | 1351 |
Matrix_338 | AP2 | Not available | Downstream | 1353 |
Matrix_348 | AT5G51910 | Not available | Downstream | 1181 |
Matrix_356 | PRR5 | Not available | Downstream | 1353 |
Matrix_39 | AP1 | Not available | Upstream | -189 |
Matrix_40 | TCP2 | Not available | Downstream | 1181 |
Matrix_403 | BZR1 | Not available | Downstream | 1354 |
Matrix_42 | AT2G45680 | Not available | Downstream | 1181 |
Matrix_443 | AGL15 | Not available | Downstream | 1354 |
Matrix_48 | PI | Not available | Upstream | -35 |
Matrix_507 | TCP3 | Not available | Downstream | 1180 |
Matrix_82 | TCP17 | Not available | Downstream | 1181 |
Motif_188 | CDA1ATCAB2 | CDA-1 (CAB2 DET1-associated factor 1) binding site in DtRE (dark response element) f of chlorophyll a/b-binding protein2 (CAB2) gene in Arabidopsis | Upstream | -19 |
Motif_192 | BOXLCOREDCPAL | Consensus of the putative core sequences of box-L-like sequences in carrot; PAL1 promoter region; DCMYB1 bound to these sequences in vitro | Upstream | -127 |
Motif_254 | MYB46;MYB83 | MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes | Upstream | -127 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Upstream | -62 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -126 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -168 |
Motif_419 | MYB4 binding site motif | Not available | Upstream | -127 |
Motif_426 | MYB58;MYB63 | MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Upstream | -127 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -330 |
Motif_51 | MYB46 | Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis | Upstream | -128 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -330 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -130 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -74 |
| | | Upstream | -72 |
| | | Upstream | -70 |
| | | Upstream | -31 |
| | | Upstream | -29 |