View conserved binding sites


Gene
GM12G33990
Description
WRKY transcription factor 69
Alias
Glyma12g33990;Glyma12g33990.1;PAC:26292062;Glyma12g33990.1
Binding siteNameDescriptionLocationPosition
Matrix_119RRTF1Not availableUpstream-197
Matrix_138RRTF1Not availableUpstream-197
Matrix_146ORA47Not availableUpstream-196
Matrix_151ASIL1Not availableIntron624
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableIntron613
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-981
Matrix_183BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaIntron1574
Matrix_186FHY3Not availableIntron1574
Matrix_209RAP2.6Not availableUpstream-198
Matrix_224ERF1Not availableUpstream-197
Intron612
Intron621
Intron624
Intron649
Matrix_234RAP2.3Not availableUpstream-196
Matrix_243RAP2.12;RAP2.2Not availableIntron612
Intron624
Intron651
Matrix_252RAP2.6Not availableIntron607
Intron608
Intron610
Intron611
Intron620
Intron623
Matrix_261ATERF-1Not availableUpstream-196
Matrix_277RAP2.6Not availableUpstream-197
Intron649
Matrix_287ERF2Not availableUpstream-196
Intron607
Intron611
Intron620
Intron623
Intron650
Matrix_288RAP2.3Not availableUpstream-197
Matrix_295ERF1Not availableUpstream-196
Intron613
Intron622
Intron650
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-197
Intron612
Intron621
Intron624
Intron649
Matrix_334AT3G23230Not availableUpstream-195
Intron612
Intron621
Intron624
Intron651
Matrix_343AT2G33710Not availableUpstream-196
Intron607
Intron611
Intron620
Intron623
Matrix_344ATERF15;AT4G18450Not availableIntron613
Intron622
Intron625
Matrix_355ERF10;ERF11Not availableUpstream-197
Intron606
Intron612
Intron621
Intron624
Matrix_360ORA59Not availableUpstream-196
Intron613
Intron622
Matrix_363RAP2.3Not availableUpstream-197
Matrix_374AT5G07580;AT5G61590Not availableUpstream-196
Intron612
Intron621
Intron624
Intron625
Matrix_378ATERF1Not availableUpstream-196
Intron607
Intron610
Intron611
Intron620
Intron623
Matrix_387ORA47Not availableIntron605
Matrix_395AT1G19210;ORA47;AT4G31060;AT5G21960Not availableIntron613
Matrix_406ATERF-7Not availableUpstream-198
Intron613
Intron622
Intron623
Matrix_409DEAR3Not availableIntron606
Intron612
Intron621
Intron624
Matrix_426CRF1;CRF2Not availableUpstream-195
Matrix_433ATERF1Not availableIntron624
Matrix_462ATERF-8Not availableIntron613
Intron622
Intron623
Matrix_473RRTF1Not availableUpstream-196
Matrix_48PINot availableUpstream-161
Matrix_484ATERF13Not availableUpstream-196
Intron613
Intron622
Intron625
Matrix_493AT1G22985;AT1G71130Not availableUpstream-196
Intron612
Intron621
Intron624
Matrix_50ATERF14;AT5G43410Not availableUpstream-197
Intron612
Intron621
Intron624
Intron649
Matrix_506DRNL;ATERF-4Not availableIntron612
Intron621
Intron624
Intron651
Matrix_510AtMYB84More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thalianaUpstream-947
Matrix_57WIN1;SHN3;SHN2Not availableIntron612
Intron621
Intron624
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-195
Matrix_91CRF3Not availableUpstream-196
Intron607
Intron612
Intron621
Intron624
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-154
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-260
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-519
Motif_153MARABOX1A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)Upstream-690
Motif_183TRANSINITDICOTSContext sequence of translational initiation codon in dicotsUpstream-200
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-210
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-205
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-171
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-195
Motif_320AGCBOXNPGLBAGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC boxUpstream-195
Motif_33ACGTCBOXC-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding siteUpstream-234
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-518
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-257
Upstream-225
Motif_495TRANSINITMONOCOTSContext sequence of translational initiation codon in monocotsUpstream-200
Motif_50AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responsesUpstream-196
Motif_575TATABOX3TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A geneUpstream-255
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-1891
Upstream-1890
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-141
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-141
Motif_85SORLIP5ATone of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray dataUpstream-154