Matrix_119 | RRTF1 | Not available | Upstream | -197 |
Matrix_138 | RRTF1 | Not available | Upstream | -197 |
Matrix_146 | ORA47 | Not available | Upstream | -196 |
Matrix_151 | ASIL1 | Not available | Intron | 624 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Intron | 613 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -981 |
Matrix_183 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Intron | 1574 |
Matrix_186 | FHY3 | Not available | Intron | 1574 |
Matrix_209 | RAP2.6 | Not available | Upstream | -198 |
Matrix_224 | ERF1 | Not available | Upstream | -197 |
| | | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
| | | Intron | 649 |
Matrix_234 | RAP2.3 | Not available | Upstream | -196 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Intron | 612 |
| | | Intron | 624 |
| | | Intron | 651 |
Matrix_252 | RAP2.6 | Not available | Intron | 607 |
| | | Intron | 608 |
| | | Intron | 610 |
| | | Intron | 611 |
| | | Intron | 620 |
| | | Intron | 623 |
Matrix_261 | ATERF-1 | Not available | Upstream | -196 |
Matrix_277 | RAP2.6 | Not available | Upstream | -197 |
| | | Intron | 649 |
Matrix_287 | ERF2 | Not available | Upstream | -196 |
| | | Intron | 607 |
| | | Intron | 611 |
| | | Intron | 620 |
| | | Intron | 623 |
| | | Intron | 650 |
Matrix_288 | RAP2.3 | Not available | Upstream | -197 |
Matrix_295 | ERF1 | Not available | Upstream | -196 |
| | | Intron | 613 |
| | | Intron | 622 |
| | | Intron | 650 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -197 |
| | | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
| | | Intron | 649 |
Matrix_334 | AT3G23230 | Not available | Upstream | -195 |
| | | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
| | | Intron | 651 |
Matrix_343 | AT2G33710 | Not available | Upstream | -196 |
| | | Intron | 607 |
| | | Intron | 611 |
| | | Intron | 620 |
| | | Intron | 623 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Intron | 613 |
| | | Intron | 622 |
| | | Intron | 625 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -197 |
| | | Intron | 606 |
| | | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
Matrix_360 | ORA59 | Not available | Upstream | -196 |
| | | Intron | 613 |
| | | Intron | 622 |
Matrix_363 | RAP2.3 | Not available | Upstream | -197 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -196 |
| | | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
| | | Intron | 625 |
Matrix_378 | ATERF1 | Not available | Upstream | -196 |
| | | Intron | 607 |
| | | Intron | 610 |
| | | Intron | 611 |
| | | Intron | 620 |
| | | Intron | 623 |
Matrix_387 | ORA47 | Not available | Intron | 605 |
Matrix_395 | AT1G19210;ORA47;AT4G31060;AT5G21960 | Not available | Intron | 613 |
Matrix_406 | ATERF-7 | Not available | Upstream | -198 |
| | | Intron | 613 |
| | | Intron | 622 |
| | | Intron | 623 |
Matrix_409 | DEAR3 | Not available | Intron | 606 |
| | | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -195 |
Matrix_433 | ATERF1 | Not available | Intron | 624 |
Matrix_462 | ATERF-8 | Not available | Intron | 613 |
| | | Intron | 622 |
| | | Intron | 623 |
Matrix_473 | RRTF1 | Not available | Upstream | -196 |
Matrix_48 | PI | Not available | Upstream | -161 |
Matrix_484 | ATERF13 | Not available | Upstream | -196 |
| | | Intron | 613 |
| | | Intron | 622 |
| | | Intron | 625 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -196 |
| | | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -197 |
| | | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
| | | Intron | 649 |
Matrix_506 | DRNL;ATERF-4 | Not available | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
| | | Intron | 651 |
Matrix_510 | AtMYB84 | More than 80 R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana | Upstream | -947 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -195 |
Matrix_91 | CRF3 | Not available | Upstream | -196 |
| | | Intron | 607 |
| | | Intron | 612 |
| | | Intron | 621 |
| | | Intron | 624 |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | Upstream | -154 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -260 |
Motif_139 | RHERPATEXPA7 | Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patterns | Upstream | -519 |
Motif_153 | MARABOX1 | A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR) | Upstream | -690 |
Motif_183 | TRANSINITDICOTS | Context sequence of translational initiation codon in dicots | Upstream | -200 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -210 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -205 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -171 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -195 |
Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | Upstream | -195 |
Motif_33 | ACGTCBOX | C-box according to the nomenclature of ACGT elements; One of ACGT elements; Factors groups 1, 2 and 3 have affinity for C-box;RITA-1 binding site | Upstream | -234 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -518 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -257 |
| | | Upstream | -225 |
Motif_495 | TRANSINITMONOCOTS | Context sequence of translational initiation codon in monocots | Upstream | -200 |
Motif_50 | AtERF-7;AtERF-4;AtERF-3;AtERF-1;AtERF-2;AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | Upstream | -196 |
Motif_575 | TATABOX3 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene | Upstream | -255 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -1891 |
| | | Upstream | -1890 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -141 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -141 |
Motif_85 | SORLIP5AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Over-represented in both light-induced cotyledon-specific and root-specific genes; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | Upstream | -154 |