Matrix_109 | GBF3 | Not available | Upstream | -938 |
| | | Upstream | -940 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -670 |
Matrix_143 | GATA14;GATA6;GATA5 | Not available | Upstream | -535 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -648 |
| | | Upstream | -649 |
Matrix_151 | ASIL1 | Not available | Upstream | -648 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -648 |
| | | Upstream | -649 |
| | | Upstream | -650 |
Matrix_169 | E2F1 | Not available | Upstream | -670 |
| | | Upstream | -672 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -673 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Upstream | -805 |
Matrix_208 | AP1 | Not available | Upstream | -54 |
Matrix_224 | ERF1 | Not available | Upstream | -604 |
| | | Upstream | -605 |
Matrix_23 | ANAC46 | Not available | Downstream | 3760 |
Matrix_25 | AP3 | Not available | Upstream | -700 |
Matrix_252 | RAP2.6 | Not available | Upstream | -605 |
| | | Upstream | -606 |
Matrix_256 | IXR11;KNAT5;KNAT4;KNAT3 | Not available | Upstream | -606 |
Matrix_315 | MYB111 | Not available | Upstream | -1104 |
Matrix_331 | GBF1 | Not available | Upstream | -938 |
| | | Upstream | -940 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -648 |
| | | Upstream | -649 |
Matrix_35 | YAB5;YAB3 | Not available | Upstream | -673 |
Matrix_360 | ORA59 | Not available | Upstream | -648 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -648 |
Matrix_387 | ORA47 | Not available | Upstream | -601 |
| | | Upstream | -934 |
Matrix_388 | SNZ;SMZ;TOE2 | Not available | Upstream | -916 |
Matrix_406 | ATERF-7 | Not available | Upstream | -601 |
| | | Upstream | -647 |
| | | Upstream | -648 |
| | | Upstream | -649 |
Matrix_418 | KNAT6;KNAT2 | Not available | Upstream | -606 |
Matrix_433 | ATERF1 | Not available | Upstream | -648 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -605 |
| | | Upstream | -606 |
| | | Upstream | -937 |
| | | Upstream | -939 |
Matrix_448 | ATERF6 | Not available | Upstream | -648 |
Matrix_45 | DRN | Not available | Upstream | -648 |
| | | Upstream | -649 |
Matrix_462 | ATERF-8 | Not available | Upstream | -601 |
| | | Upstream | -647 |
| | | Upstream | -648 |
| | | Upstream | -649 |
Matrix_480 | BES1 | Not available | Upstream | -938 |
| | | Upstream | -939 |
Matrix_484 | ATERF13 | Not available | Upstream | -648 |
Matrix_488 | ABF1 | Not available | Upstream | -606 |
| | | Upstream | -665 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -648 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -648 |
| | | Upstream | -649 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -606 |
Matrix_517 | ERF12 | Not available | Upstream | -605 |
| | | Upstream | -606 |
| | | Upstream | -648 |
| | | Upstream | -649 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -606 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -604 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -940 |
Motif_125 | BOXIINTPATPB | Box II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | Upstream | -745 |
| | | Upstream | -820 |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | Upstream | -850 |
Motif_16 | -300ELEMENT | Present upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIF | Downstream | 3817 |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | Upstream | -739 |
Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Downstream | 3812 |
Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Downstream | 3766 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -808 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 3692 |
Motif_318 | CGCGBOXAT | CGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRs | Upstream | -674 |
Motif_321 | TATABOX5 | TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysis | Upstream | -848 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -847 |
| | | Upstream | -853 |
Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | Upstream | -608 |
| | | Upstream | -637 |
Motif_370 | TATABOX2 | TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | Upstream | -741 |
Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | Upstream | -602 |
| | | Upstream | -804 |
| | | Upstream | -935 |
Motif_410 | ANAERO1CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curator | Downstream | 3709 |
| | | Upstream | -96 |
| | | Upstream | -457 |
Motif_422 | SP8BFIBSP8BIB | One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | Downstream | 3698 |
Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | Downstream | 3827 |
| | | Downstream | 3824 |
| | | Upstream | -735 |
| | | Upstream | -902 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -657 |
Motif_475 | GATA-1 | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 3693 |
Motif_533 | Bellringer/replumless/pennywise BS3 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | Upstream | -1390 |
| | | Upstream | -1552 |
| | | Upstream | -1666 |
Motif_609 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 3709 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -846 |
Motif_65 | BS1EGCCR | BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression | Upstream | -813 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 3719 |
| | | Downstream | 3693 |
| | | Upstream | -664 |
| | | Upstream | -824 |
Motif_666 | MYB binding site promoter | A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes | Upstream | -1104 |
Motif_672 | AP2 | The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element | Downstream | 3709 |
Motif_673 | Bellringer/replumless/pennywise BS2 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | Upstream | -1390 |
| | | Upstream | -1552 |
| | | Upstream | -1666 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 3719 |
Motif_76 | SURE1STPAT21 | Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato | Upstream | -818 |