View conserved binding sites


Gene
GM10G35890
Description
Alkaline/neutral invertase
Alias
Glyma10g35890;Glyma10g35890.3;PAC:26345756;Glyma10g35890.3
Binding siteNameDescriptionLocationPosition
Matrix_109GBF3Not availableUpstream-938
Upstream-940
Matrix_110ATABI4;AT3G57600Not availableUpstream-670
Matrix_143GATA14;GATA6;GATA5Not availableUpstream-535
Matrix_147ERF3;AT1G80580Not availableUpstream-648
Upstream-649
Matrix_151ASIL1Not availableUpstream-648
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-648
Upstream-649
Upstream-650
Matrix_169E2F1Not availableUpstream-670
Upstream-672
Matrix_171LBD3;LBD4Not availableUpstream-673
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableUpstream-805
Matrix_208AP1Not availableUpstream-54
Matrix_224ERF1Not availableUpstream-604
Upstream-605
Matrix_23ANAC46Not availableDownstream3760
Matrix_25AP3Not availableUpstream-700
Matrix_252RAP2.6Not availableUpstream-605
Upstream-606
Matrix_256IXR11;KNAT5;KNAT4;KNAT3Not availableUpstream-606
Matrix_315MYB111Not availableUpstream-1104
Matrix_331GBF1Not availableUpstream-938
Upstream-940
Matrix_344ATERF15;AT4G18450Not availableUpstream-648
Upstream-649
Matrix_35YAB5;YAB3Not availableUpstream-673
Matrix_360ORA59Not availableUpstream-648
Matrix_374AT5G07580;AT5G61590Not availableUpstream-648
Matrix_387ORA47Not availableUpstream-601
Upstream-934
Matrix_388SNZ;SMZ;TOE2Not availableUpstream-916
Matrix_406ATERF-7Not availableUpstream-601
Upstream-647
Upstream-648
Upstream-649
Matrix_418KNAT6;KNAT2Not availableUpstream-606
Matrix_433ATERF1Not availableUpstream-648
Matrix_438AtbZIP63Not availableUpstream-605
Upstream-606
Upstream-937
Upstream-939
Matrix_448ATERF6Not availableUpstream-648
Matrix_45DRNNot availableUpstream-648
Upstream-649
Matrix_462ATERF-8Not availableUpstream-601
Upstream-647
Upstream-648
Upstream-649
Matrix_480BES1Not availableUpstream-938
Upstream-939
Matrix_484ATERF13Not availableUpstream-648
Matrix_488ABF1Not availableUpstream-606
Upstream-665
Matrix_493AT1G22985;AT1G71130Not availableUpstream-648
Matrix_5AT5G51190;ERF104Not availableUpstream-648
Upstream-649
Matrix_506DRNL;ATERF-4Not availableUpstream-606
Matrix_517ERF12Not availableUpstream-605
Upstream-606
Upstream-648
Upstream-649
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-606
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-604
Matrix_60AT1G01260;AT5G57150Not availableUpstream-940
Motif_125BOXIINTPATPBBox II found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoterUpstream-745
Upstream-820
Motif_136SEF4MOTIFGM7SSEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4)Upstream-850
Motif_16-300ELEMENTPresent upstream of the promoter from the B-hordein gene of barley and the alpha-gliadin, gamma-gliadin, and low molecular weight glutenin genes of wheat; See S000001 -300CORE; See S000002 -300MOTIFDownstream3817
Motif_235C8GCARGATBinding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)Upstream-739
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemDownstream3812
Motif_258-10PEHVPSBD-10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A lightDownstream3766
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-808
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream3692
Motif_318CGCGBOXATCGCG box recognized by AtSR1-6 (Arabidopsis thaliana signal-responsive genes); Multiple CGCG elements are found in promoters of many genes; Ca2+/calmodulin binds to all AtSRsUpstream-674
Motif_321TATABOX5TATA box; TATA box found in the 5'upstream region of pea (Pisum sativum) glutamine synthetase gene; a functional TATA element by in vivo analysisUpstream-848
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-847
Upstream-853
Motif_353HEXAMERATH4hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 geneUpstream-608
Upstream-637
Motif_370TATABOX2TATA box; TATA box found in the 5'upstream region of pea legA gene; sporamin A of sweet potato; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiationUpstream-741
Motif_392PALBOXAPCBox A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box LUpstream-602
Upstream-804
Upstream-935
Motif_410ANAERO1CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO1CONSENSUS by the PLACEdb curatorDownstream3709
Upstream-96
Upstream-457
Motif_422SP8BFIBSP8BIBOne of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8bDownstream3698
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Downstream3827
Downstream3824
Upstream-735
Upstream-902
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-657
Motif_475GATA-1Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream3693
Motif_533Bellringer/replumless/pennywise BS3 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence MeristemsUpstream-1390
Upstream-1552
Upstream-1666
Motif_609AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3709
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-846
Motif_65BS1EGCCRBS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expressionUpstream-813
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream3719
Downstream3693
Upstream-664
Upstream-824
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-1104
Motif_672AP2The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence elementDownstream3709
Motif_673Bellringer/replumless/pennywise BS2 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence MeristemsUpstream-1390
Upstream-1552
Upstream-1666
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream3719
Motif_76SURE1STPAT21Sucrose Responsive Element (SURE); A motif conserved among genes regulated by sucrose; See also SURE2STPAT21; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potatoUpstream-818