View conserved binding sites


Gene
GM10G32080
Description
b binding protein of LHCII type I, chloroplastic
Alias
Glyma10g32080;Glyma10g32080.1;PAC:26346409;Glyma10g32080.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-201
Upstream-114
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-114
Upstream-107
Matrix_109GBF3Not availableUpstream-114
Upstream-112
Matrix_113ABI5Not availableUpstream-114
Upstream-112
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-204
Upstream-117
Upstream-116
Matrix_120BEE2Not availableUpstream-113
Upstream-106
Matrix_122ABF1;AREB2Not availableUpstream-114
Upstream-113
Matrix_129ABF1Not availableUpstream-200
Upstream-113
Matrix_134ABF1Not availableUpstream-200
Upstream-112
Matrix_14ZCW32;AT5G62610Not availableUpstream-113
Upstream-112
Upstream-106
Upstream-105
Matrix_145GBF4;AT5G44080Not availableUpstream-199
Upstream-112
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-117
Upstream-110
Matrix_153AP2Not availableUpstream-107
Matrix_156POC1Not availableUpstream-114
Upstream-112
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-113
Upstream-106
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-116
Matrix_192FHY3/FAR1Not availableUpstream-112
Matrix_194HYH;HY5Not availableUpstream-116
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-113
Upstream-106
Matrix_214AP1Not availableUpstream-202
Upstream-115
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-112
Upstream-109
Matrix_233MYC3Not availableUpstream-112
Upstream-105
Matrix_24POC1Not availableUpstream-117
Matrix_247PIF3Not availableUpstream-113
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signalingUpstream-203
Matrix_259AT1G50680;AT1G51120Not availableUpstream-113
Matrix_264ATAREB1Not availableUpstream-200
Upstream-113
Upstream-109
Matrix_27ATAIB;ATNIG1Not availableUpstream-105
Upstream-104
Matrix_296GBF2Not availableUpstream-113
Upstream-112
Matrix_300bZIP68;bZIP16Not availableUpstream-113
Upstream-112
Matrix_301PIL5Not availableUpstream-118
Upstream-112
Upstream-111
Upstream-105
Matrix_320MYC4Not availableUpstream-105
Matrix_323BIM3Not availableUpstream-113
Upstream-106
Matrix_330MYC2;TT8Not availableUpstream-113
Upstream-106
Matrix_331GBF1Not availableUpstream-114
Upstream-112
Matrix_332SPT;ALCNot availableUpstream-113
Upstream-112
Upstream-106
Matrix_338AP2Not availableUpstream-116
Matrix_339bHLH104Not availableUpstream-106
Matrix_345POC1Not availableUpstream-117
Upstream-116
Matrix_356PRR5Not availableUpstream-207
Upstream-120
Upstream-116
Upstream-109
Matrix_365AT1G10120;AT1G25330;CIB5;AT1G68920;AT3G23690;CIB1Not availableUpstream-105
Matrix_369AT2G18300Not availableUpstream-108
Upstream-106
Matrix_389ILR3Not availableUpstream-113
Upstream-106
Matrix_403BZR1Not availableUpstream-115
Matrix_437MYC2Not availableUpstream-105
Matrix_438AtbZIP63Not availableUpstream-115
Matrix_443AGL15Not availableUpstream-202
Upstream-115
Matrix_449BIM2Not availableUpstream-113
Upstream-106
Matrix_456bZIP60Not availableUpstream-365
Matrix_465MYC4Not availableUpstream-113
Upstream-106
Matrix_476bHLH115;bHLH34Not availableUpstream-105
Matrix_480BES1Not availableUpstream-201
Upstream-114
Upstream-113
Matrix_488ABF1Not availableUpstream-114
Matrix_53MYC3Not availableUpstream-111
Upstream-108
Matrix_55PIF3Not availableUpstream-201
Upstream-114
Matrix_60AT1G01260;AT5G57150Not availableUpstream-199
Upstream-112
Matrix_64PIF5Not availableUpstream-112
Matrix_65POC1;PIL1Not availableUpstream-199
Upstream-112
Upstream-111
Matrix_7PIF4Not availableUpstream-113
Upstream-111
Upstream-106
Matrix_77PRR5Not availableUpstream-115
Upstream-114
Upstream-108
Matrix_80BIM1Not availableUpstream-112
Upstream-107
Upstream-105
Matrix_90BEE1;BEE3;AT3G07340;AT5G48560;AT5G50915Not availableUpstream-105
Motif_116INRNTPSADBInr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA boxUpstream-63
Motif_139RHERPATEXPA7Right part of RHEs (Root Hair-specific cis-Elements) conserved among the Arabidopsis thaliana A7 (AtEXPA7) orthologous (and paralogous) genes from diverse angiosperm species with different hair distribution patternsUpstream-105
Upstream-103
Motif_150RBCSCONSENSUSrbcS general consensus sequence; AATCCAA or AATCCAACUpstream-184
Upstream-164
Motif_174SREATMSDsugar-repressive element (SRE) found in 272 of the 1592 down-regulated genes after main stem decapitation in ArabidopsisUpstream-270
Upstream-258
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-198
Upstream-111
Upstream-104
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-181
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-198
Upstream-111
Upstream-104
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-112
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-199
Upstream-198
Upstream-112
Upstream-111
Upstream-105
Upstream-104
Motif_22RYREPEATLEGUMINBOXRY repeat (CATGCAY) or legumin box found in seed-storage protein genes in legume such as soybeanUpstream-84
Motif_244ABRE-like binding site motifNot availableUpstream-200
Upstream-111
Motif_249DPBF1&2 binding site motifA novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid systemUpstream-198
Motif_254MYB46;MYB83MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genesUpstream-91
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-111
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-219
Upstream-198
Upstream-111
Upstream-104
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisDownstream2777
Motif_357NTBBF1ARROLBNtBBF1(Dof protein from tobacco) binding site in Agrobacterium rhizogenes rolB gene; Found in regulatory domain B (-341 to -306); Required for tissue-specific expression and auxin inductionDownstream2775
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationUpstream-140
Motif_400ABREAZMRAB28ABA-responsive element (ABRE A) found at -148 to -139 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissuesUpstream-113
Motif_419MYB4 binding site motifNot availableUpstream-91
Motif_437ANAERO2CONSENSUSOne of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1)Upstream-226
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-199
Upstream-112
Upstream-111
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-112
Motif_48BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-221
Upstream-196
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-187
Motif_51MYB46Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesisUpstream-92
Motif_511RYREPEATGMGY2RY repeat motif (CATGCAT); Present in the 5' region of the soybean glycinin gene (Gy2)Upstream-84
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-110
Motif_580L1BOXATPDF1L1 box found in promoter of Arabidopsis thaliana PROTODERMAL FACTOR1 (PDF1) gene; Located between -134 and -127; Involved in L1 layer-specific expression; L1-specific homeodomain protein ATML can bind to the L1 box; Y=C/T; A cotton fiber gene, RD22-like 1 (RDL1), contains a homeodomain binding L1 box and a MYB binding motif ; HDZip IV; Identification of a cis-regulatory element for L1 layer-specific gene expression, which is targeted by an L1-specific homeodomain proteinDownstream2732
Motif_606NAPINMOTIFBNSequence found in 5' upstream region (-6, -95, -188) of napin (2S albumin) gene in Brassica napus; Interact with a protein present in crude nuclear extracts from developing B. napus seedsUpstream-158
Motif_618MYB1ATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in ArabidopsisUpstream-141
Upstream-88
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-110
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Upstream-257
Motif_638ABRE binding site motifNot availableUpstream-111
Motif_640RYREPEATBNNAPARY repeat found in RY/G box (the complex containing the two RY repeats and the G-box) of napA gene in Brassica napus; Found between -78 and -50; Required for seed specific expression;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABREUpstream-84
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-110
Motif_648ARE2ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1Upstream-365
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-269
Upstream-259
Upstream-188
Motif_666MYB binding site promoterA flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genesUpstream-92